Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A8-A08I-01A | TCGA-A8-A08I | XPR1|TYW3 | XPR1 | TYW3 | 1 | 1 | 1 | 1 | 11 | 14 | 13 | 0.3 | 180651547 | 75202226 | tier1 | Out-of-frame | 19981 | NA | 0 |
| BRCA | TCGA-AN-A0AR-01A | TCGA-AN-A0AR | XYLB|ITGA9 | XYLB | ITGA9 | 3 | 3 | 1 | 1 | 2 | 4 | 4 | 0.3 | 38390123 | 37695205 | tier2 | Out-of-frame | 20004 | NA | 0 |
| BRCA | TCGA-A8-A086-01A | TCGA-A8-A086 | YAP1|STIM1 | YAP1 | STIM1 | 11 | 11 | 1 | 1 | 6 | 10 | 9 | 2.7 | 102080295 | 4045103 | tier1 | In-frame | 20018 | NA | 0 |
| BRCA | TCGA-A8-A06U-01A | TCGA-A8-A06U | ZBTB20|CD96 | ZBTB20 | CD96 | 3 | 3 | -1 | 1 | 15 | 29 | 20 | 0.004 | 114790066 | 111366390 | tier1 | 5UTR-CDS | 20080 | NA | 0 |
| BRCA | TCGA-D8-A1XK-01A | TCGA-D8-A1XK | ZBTB48|TAS1R1 | ZBTB48 | TAS1R1 | 1 | 1 | 1 | 1 | 14 | 2 | 2 | 0.021 | 6648904 | 6637010 | tier1 | In-frame | 20117 | NA | 0 |
| BRCA | TCGA-D8-A27R-01A | TCGA-D8-A27R | ZCCHC7|ASTN2 | ZCCHC7 | ASTN2 | 9 | 9 | 1 | -1 | 12 | 5 | 5 | 0.44 | 37126939 | 119626012 | tier1 | Out-of-frame | 20168 | NA | 0 |
| BRCA | TCGA-AN-A0AJ-01A | TCGA-AN-A0AJ | ZDHHC5|LCT | ZDHHC5 | LCT | 11 | 2 | 1 | -1 | 51 | 34 | 31 | 0.002 | 57440666 | 136555708 | tier1 | Out-of-frame | 20225 | NA | 0 |
| BRCA | TCGA-A2-A4S1-01A | TCGA-A2-A4S1 | ZFAND3|C6orf89 | ZFAND3 | C6orf89 | 6 | 6 | 1 | 1 | 8 | 12 | 11 | 0.31 | 37787792 | 36869997 | tier1 | CDS-5UTR | 20241 | NA | 0 |
| BRCA | TCGA-A1-A0SJ-01A | TCGA-A1-A0SJ | ZFC3H1|CDH4 | ZFC3H1 | CDH4 | 12 | 20 | -1 | 1 | 5 | 5 | 5 | 0.25 | 72013095 | 60427810 | tier1 | Out-of-frame | 20251 | NA | 0 |
| BRCA | TCGA-AC-A7VB-01A | TCGA-AC-A7VB | ZFC3H1|SHISA9 | ZFC3H1 | SHISA9 | 12 | 16 | -1 | 1 | 4 | 1 | 1 | 1.1 | 72036216 | 13297251 | tier2 | In-frame | 20254 | NA | 0 |
| BRCA | TCGA-OL-A66P-01A | TCGA-OL-A66P | ZFP30|PRX | ZFP30 | PRX | 19 | 19 | -1 | -1 | 5 | 1 | 1 | 0.26 | 38145613 | 40914290 | tier4 | 5UTR-5UTR | 20271 | NA | 0 |
| BRCA | TCGA-C8-A12P-01A | TCGA-C8-A12P | ZFP41|ANGPT1 | ZFP41 | ANGPT1 | 8 | 8 | 1 | -1 | 5 | 2 | 1 | 0.21 | 144333510 | 108334356 | tier2 | 3UTR-CDS | 20272 | NA | 0 |
| BRCA | TCGA-A1-A0SJ-01A | TCGA-A1-A0SJ | ZFP91|NOX4 | ZFP91 | NOX4 | 11 | 11 | 1 | -1 | 8 | 6 | 6 | 0.23 | 58352357 | 89088211 | tier1 | In-frame | 20276 | NA | 0 |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | ZKSCAN5|SMO | ZKSCAN5 | SMO | 7 | 7 | 1 | 1 | 28 | 13 | 11 | 0.58 | 99110214 | 128843225 | tier1 | In-frame | 20312 | NA | 0 |
| BRCA | TCGA-AC-A7VB-01A | TCGA-AC-A7VB | ZNF257|TRHDE | ZNF257 | TRHDE | 19 | 12 | 1 | 1 | 4 | 3 | 3 | 0.058 | 22235437 | 72863538 | tier4 | Out-of-frame | 20423 | NA | 0 |
| BRCA | TCGA-BH-A0B1-01A | TCGA-BH-A0B1 | ZNF423|NOD2 | ZNF423 | NOD2 | 16 | 16 | -1 | 1 | 4 | 1 | 1 | 0.77 | 49764682 | 50733399 | tier3 | In-frame | 20495 | NA | 0 |
| BRCA | TCGA-C8-A12P-01A | TCGA-C8-A12P | ZNF585A|GRAMD1A | ZNF585A | GRAMD1A | 19 | 19 | -1 | 1 | 8 | 8 | 8 | 0.41 | 37656497 | 35504160 | tier1 | 5UTR-CDS | 20566 | NA | 0 |
| BRCA | TCGA-AO-A03V-01A | TCGA-AO-A03V | ZNF586|SRC | ZNF586 | SRC | 19 | 20 | 1 | 1 | 17 | 3 | 3 | 0.031 | 58281246 | 36028518 | tier1 | 5UTR-CDS | 20571 | NA | 0 |
| BRCA | TCGA-AO-A03V-01A | TCGA-AO-A03V | ZNF587|SRC | ZNF587 | SRC | 19 | 20 | 1 | 1 | 68 | 28 | 22 | 1.1 | 58331313 | 36028518 | tier1 | Out-of-frame | 20574 | NA | 0 |
| BRCA | TCGA-AR-A1AO-01A | TCGA-AR-A1AO | ZNF594|C17orf87 | ZNF594 | C17orf87 | 17 | 17 | -1 | -1 | 2 | 2 | 2 | 0.55 | 5095043 | 5114250 | tier3 | 5UTR-CDS | 20579 | NA | 0 |
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