Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-5T-A9QA-01A | TCGA-5T-A9QA | PRKRIR|ANO1 | PRKRIR | ANO1 | 11 | 11 | -1 | 1 | 22 | 29 | 28 | 0.33 | 76091792 | 70016993 | tier1 | Out-of-frame | 13574 | NA | 0.37046 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | PRLR|KDM3B | PRLR | KDM3B | 5 | 5 | -1 | 1 | 3 | 1 | 1 | 0.82 | 35230370 | 137708363 | tier2 | 5UTR-CDS | 13580 | NA | 0.37066 |
| BRCA | TCGA-D8-A13Z-01A | TCGA-D8-A13Z | PRLR|PLCXD3 | PRLR | PLCXD3 | 5 | 5 | -1 | -1 | 42 | 21 | 21 | 0.26 | 35230370 | 41382636 | tier1 | 5UTR-CDS | 13581 | NA | 0.37332 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | PRPF18|CACNB2 | PRPF18 | CACNB2 | 10 | 10 | 1 | 1 | 10 | 5 | 4 | 0.95 | 13647744 | 18439812 | tier1 | In-frame | 13591 | non-validated | 0.37046 |
| BRCA | TCGA-C8-A8HP-01A | TCGA-C8-A8HP | PRPF6|SDC4 | PRPF6 | SDC4 | 20 | 20 | 1 | -1 | 10 | 6 | 5 | 0.28 | 62626445 | 43964560 | tier1 | In-frame | 13607 | NA | 0.37263 |
| BRCA | TCGA-S3-AA0Z-01A | TCGA-S3-AA0Z | PRR14|GSG1L | PRR14 | GSG1L | 16 | 16 | 1 | -1 | 2 | 3 | 3 | 0.38 | 30666914 | 27974524 | tier2 | CDS-5UTR | 13619 | NA | 0.35401 |
| BRCA | TCGA-D8-A13Y-01A | TCGA-D8-A13Y | PRRC2A|NCR3 | PRRC2A | NCR3 | 6 | 6 | 1 | -1 | 141 | 27 | 23 | 0.27 | 31604385 | 31557676 | tier1 | In-frame | 13636 | NA | 0.345 |
| BRCA | TCGA-A7-A0CG-01A | TCGA-A7-A0CG | PRRC2C|FASLG | PRRC2C | FASLG | 1 | 1 | 1 | 1 | 7 | 4 | 4 | 0.7 | 171454874 | 172634762 | tier1 | 5UTR-CDS | 13651 | NA | 0.364 |
| BRCA | TCGA-A8-A08P-01A | TCGA-A8-A08P | PRRG2|FCGRT | PRRG2 | FCGRT | 19 | 19 | 1 | 1 | 3 | 20 | 20 | 0.11 | 50087209 | 50027764 | tier1 | In-frame | 13658 | NA | 0.35718 |
| BRCA | TCGA-AR-A251-01A | TCGA-AR-A251 | PRUNE2|GNAQ | PRUNE2 | GNAQ | 9 | 9 | -1 | -1 | 2 | 6 | 5 | 0.84 | 79438548 | 80412564 | tier2 | Out-of-frame | 13670 | NA | 0.3772 |
| BRCA | TCGA-BH-A0GY-01A | TCGA-BH-A0GY | PTGFRN|AGBL4 | PTGFRN | AGBL4 | 1 | 1 | 1 | -1 | 13 | 4 | 4 | 3 | 117492194 | 50163109 | tier1 | In-frame | 13768 | NA | 0.35705 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | PTGFRN|NOTCH2 | PTGFRN | NOTCH2 | 1 | 1 | 1 | -1 | 3 | 8 | 8 | 0.21 | 117492194 | 120512367 | tier1 | In-frame | 13770 | non-validated | 0.38568 |
| BRCA | TCGA-A8-A06X-01A | TCGA-A8-A06X | PTK2|AC016722.1 | PTK2 | AC016722.1 | 8 | 2 | -1 | 1 | 3 | 10 | 10 | 0.051 | 142011224 | 47049240 | tier1 | 5UTR-CDS | 13773 | NA | 0.38503 |
| BRCA | TCGA-A8-A06X-01A | TCGA-A8-A06X | PTK2|AC016722.2 | PTK2 | AC016722.2 | 8 | 2 | -1 | 1 | 7 | 12 | 11 | 0.85 | 142011224 | 47083062 | tier1 | NA | 13774 | NA | 0.38503 |
| BRCA | TCGA-BH-A1FE-01A | TCGA-BH-A1FE | PTK2|NCR3 | PTK2 | NCR3 | 8 | 6 | -1 | -1 | 13 | 4 | 4 | 2.3 | 141828376 | 31557676 | tier1 | In-frame | 13779 | NA | 0.38721 |
| BRCA | TCGA-BH-A0B6-01A | TCGA-BH-A0B6 | PTK2|PPP2R5E | PTK2 | PPP2R5E | 8 | 14 | -1 | -1 | 14 | 14 | 14 | 1.2 | 141900642 | 63920603 | tier1 | Out-of-frame | 13780 | NA | 0.38626 |
| BRCA | TCGA-BH-A0C0-01A | TCGA-BH-A0C0 | PTK7|PTCRA | PTK7 | PTCRA | 6 | 6 | 1 | 1 | 2 | 8 | 8 | 0.047 | 43114436 | 42890883 | tier4 | Out-of-frame | 13796 | NA | 0.35694 |
| BRCA | TCGA-E2-A15E-06A | TCGA-E2-A15E | PTPN1|PREX1 | PTPN1 | PREX1 | 20 | 20 | 1 | -1 | 5 | 9 | 9 | 0.02 | 49191191 | 47361684 | tier1 | In-frame | 13806 | non-validated | 0.38199 |
| BRCA | TCGA-A2-A3Y0-01A | TCGA-A2-A3Y0 | PTPRA|N4BP1 | PTPRA | N4BP1 | 20 | 16 | 1 | -1 | 4 | 3 | 3 | 3.2 | 2998559 | 48596355 | tier1 | In-frame | 13844 | non-validated | 0.36962 |
| BRCA | TCGA-E9-A54X-01A | TCGA-E9-A54X | PTPRD|RAC2 | PTPRD | RAC2 | 9 | 22 | -1 | -1 | 2 | 1 | 1 | 0.53 | 10612398 | 37637698 | tier3 | 5UTR-CDS | 13851 | NA | 0.37975 |
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