Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 62 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A8-A0A9-01A | TCGA-A8-A0A9 | PPM1H|SLC6A15 | PPM1H | SLC6A15 | 12 | 12 | -1 | -1 | 44 | 76 | 67 | 0.24 | 63131282 | 85264449 | tier1 | In-frame | 13325 | NA | 0.34582 |
| BRCA | TCGA-AQ-A54N-01A | TCGA-AQ-A54N | PPP1CB|PLB1 | PPP1CB | PLB1 | 2 | 2 | 1 | 1 | 12 | 5 | 5 | 0.89 | 28975042 | 28804935 | tier1 | Out-of-frame | 13341 | NA | 0.37643 |
| BRCA | TCGA-E9-A243-01A | TCGA-E9-A243 | PPP1CB|PLB1 | PPP1CB | PLB1 | 2 | 2 | 1 | 1 | 17 | 12 | 8 | 0.89 | 28975042 | 28785908 | tier1 | In-frame | 13343 | NA | 0.37643 |
| BRCA | TCGA-B6-A0I6-01A | TCGA-B6-A0I6 | PPP1R16A|ADCK5 | PPP1R16A | ADCK5 | 8 | 8 | 1 | 1 | 15 | 12 | 12 | 0.054 | 145715595 | 145615871 | tier1 | 5UTR-CDS | 13374 | validated | 0.36126 |
| BRCA | TCGA-B6-A0IE-01A | TCGA-B6-A0IE | PPP1R16B|TTI1 | PPP1R16B | TTI1 | 20 | 20 | 1 | -1 | 2 | 1 | 1 | 0.88 | 37434435 | 36642259 | tier2 | 5UTR-5UTR | 13378 | NA | 0.34894 |
| BRCA | TCGA-C8-A12Z-01A | TCGA-C8-A12Z | PPP1R1B|ANXA1 | PPP1R1B | ANXA1 | 17 | 9 | 1 | 1 | 2 | 20 | 15 | 0.5 | 37792875 | 75772570 | tier3 | 3UTR-5UTR | 13379 | NA | 0.37417 |
| BRCA | TCGA-OL-A5D6-01A | TCGA-OL-A5D6 | PPP2R4|FAM73B | PPP2R4 | FAM73B | 9 | 9 | 1 | 1 | 25 | 11 | 11 | 0.031 | 131901928 | 131831355 | tier1 | 5UTR-CDS | 13403 | NA | 0.35901 |
| BRCA | TCGA-B6-A0RT-01A | TCGA-B6-A0RT | PPP2R5C|SCN1B | PPP2R5C | SCN1B | 14 | 19 | 1 | 1 | 17 | 6 | 6 | 0.8 | 102276373 | 35523432 | tier1 | In-frame | 13413 | non-validated | 0.37013 |
| BRCA | TCGA-E2-A15A-01A | TCGA-E2-A15A | PPP6R3|FADD | PPP6R3 | FADD | 11 | 11 | 1 | 1 | 21 | 7 | 6 | 1.2 | 68228295 | 70052239 | tier1 | 5UTR-CDS | 13458 | NA | 0.37035 |
| BRCA | TCGA-A2-A04V-01A | TCGA-A2-A04V | PRDM1|SLC22A16 | PRDM1 | SLC22A16 | 6 | 6 | 1 | -1 | 4 | 1 | 1 | 0.36 | 106554374 | 110763978 | tier2 | In-frame | 13496 | NA | 0.37296 |
| BRCA | TCGA-A2-A04W-01A | TCGA-A2-A04W | PREP|DCBLD1 | PREP | DCBLD1 | 6 | 6 | -1 | 1 | 20 | 14 | 12 | 0.031 | 105771540 | 117824930 | tier1 | Out-of-frame | 13510 | NA | 0.34696 |
| BRCA | TCGA-AO-A1KS-01A | TCGA-AO-A1KS | PREX1|EHBP1 | PREX1 | EHBP1 | 20 | 2 | -1 | 1 | 11 | 11 | 9 | 0.36 | 47444179 | 62934032 | tier1 | CDS-5UTR | 13513 | NA | 0.36017 |
| BRCA | TCGA-D8-A1JI-01A | TCGA-D8-A1JI | PREX1|MFN1 | PREX1 | MFN1 | 20 | 3 | -1 | 1 | 2 | 8 | 7 | 0.36 | 47240793 | 179096011 | tier3 | NA | 13514 | NA | 0.35675 |
| BRCA | TCGA-E2-A15A-01A | TCGA-E2-A15A | PRICKLE3|CACNA1F | PRICKLE3 | CACNA1F | X | X | -1 | -1 | 17 | 9 | 6 | 0.17 | 49040187 | 49065853 | tier1 | In-frame | 13519 | NA | 0.35226 |
| BRCA | TCGA-AC-A5XU-01A | TCGA-AC-A5XU | PRKCA|CDH8 | PRKCA | CDH8 | 17 | 16 | 1 | -1 | 3 | 2 | 2 | 0.29 | 64685165 | 61935377 | tier1 | In-frame | 13538 | NA | 0.3844 |
| BRCA | TCGA-A2-A1FW-01A | TCGA-A2-A1FW | PRKCA|CRYBA1 | PRKCA | CRYBA1 | 17 | 17 | 1 | 1 | 3 | 2 | 2 | 100 | 64302245 | 27576160 | tier1 | In-frame | 13540 | NA | 0.38283 |
| BRCA | TCGA-AC-A6IV-01A | TCGA-AC-A6IV | PRKCA|IGF2BP1 | PRKCA | IGF2BP1 | 17 | 17 | 1 | 1 | 3 | 1 | 1 | 0.48 | 64302245 | 47126714 | tier2 | Out-of-frame | 13541 | NA | 0.38301 |
| BRCA | TCGA-3C-AALI-01A | TCGA-3C-AALI | PRKCA|RGS9 | PRKCA | RGS9 | 17 | 17 | 1 | 1 | 57 | 27 | 27 | 6.2 | 64637584 | 63221120 | tier1 | Out-of-frame | 13549 | NA | 0.38365 |
| BRCA | TCGA-A2-A0YE-01A | TCGA-A2-A0YE | PRKCA|ST6GALNAC2 | PRKCA | ST6GALNAC2 | 17 | 17 | 1 | -1 | 8 | 6 | 6 | 1.5 | 64492401 | 74574898 | tier1 | Out-of-frame | 13553 | NA | 0.38195 |
| BRCA | TCGA-UL-AAZ6-01A | TCGA-UL-AAZ6 | PRKCZ|GABRD | PRKCZ | GABRD | 1 | 1 | 1 | 1 | 9 | 9 | 9 | 0.55 | 1991030 | 1956381 | tier1 | Out-of-frame | 13560 | NA | 0.38825 |
|
Showing page 62 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.