Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 61 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AO-A03V-01A | TCGA-AO-A03V | PLEKHA1|FAM187B | PLEKHA1 | FAM187B | 10 | 19 | 1 | -1 | 2 | 32 | 28 | 100 | 124134322 | 35716115 | tier2 | 5UTR-CDS | 12993 | NA | 0.3561 |
| BRCA | TCGA-C8-A12X-01A | TCGA-C8-A12X | PLEKHA2|KCNU1 | PLEKHA2 | KCNU1 | 8 | 8 | 1 | 1 | 3 | 7 | 5 | 0.21 | 38759410 | 36793033 | tier1 | NA | 12995 | NA | 0.34378 |
| BRCA | TCGA-AR-A24K-01A | TCGA-AR-A24K | PLEKHA7|SMPD1 | PLEKHA7 | SMPD1 | 11 | 11 | -1 | 1 | 4 | 9 | 9 | 0.034 | 17035536 | 6414446 | tier1 | In-frame | 13012 | NA | 0.35165 |
| BRCA | TCGA-AO-A129-01A | TCGA-AO-A129 | PLOD2|ABCG1 | PLOD2 | ABCG1 | 3 | 21 | -1 | 1 | 4 | 5 | 5 | 1.6 | 145824319 | 43645781 | tier1 | In-frame | 13041 | NA | 0.35685 |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | PLOD2|PLSCR4 | PLOD2 | PLSCR4 | 3 | 3 | -1 | -1 | 24 | 15 | 15 | 0.01 | 145878668 | 145939879 | tier1 | CDS-5UTR | 13042 | NA | 0.3578 |
| BRCA | TCGA-A2-A0CL-01A | TCGA-A2-A0CL | PLS1|CLDN18 | PLS1 | CLDN18 | 3 | 3 | 1 | 1 | 42 | 9 | 5 | 0.47 | 142315351 | 137742500 | tier1 | 5UTR-CDS | 13045 | NA | 0.3475 |
| BRCA | TCGA-A7-A4SB-01A | TCGA-A7-A4SB | PLXDC2|ST8SIA6 | PLXDC2 | ST8SIA6 | 10 | 10 | 1 | -1 | 7 | 5 | 4 | 0.25 | 20357168 | 17432619 | tier1 | Out-of-frame | 13058 | NA | 0.34426 |
| BRCA | TCGA-A8-A07R-01A | TCGA-A8-A07R | PLXDC2|SYNE1 | PLXDC2 | SYNE1 | 10 | 6 | 1 | -1 | 11 | 16 | 12 | 0.87 | 20290915 | 152793548 | tier1 | In-frame | 13059 | NA | 0.36474 |
| BRCA | TCGA-AR-A24Z-01A | TCGA-AR-A24Z | PLXNA2|DUSP10 | PLXNA2 | DUSP10 | 1 | 1 | -1 | -1 | 5 | 2 | 1 | 1.1 | 208383625 | 221879808 | tier2 | Out-of-frame | 13065 | non-validated | 0.37938 |
| BRCA | TCGA-AN-A0FV-01A | TCGA-AN-A0FV | PLXNB2|DLG2 | PLXNB2 | DLG2 | 22 | 11 | -1 | -1 | 15 | 4 | 3 | 0.52 | 50733148 | 83691685 | tier1 | 5UTR-CDS | 13071 | NA | 0.38434 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | PMEPA1|EMILIN3 | PMEPA1 | EMILIN3 | 20 | 20 | -1 | -1 | 3 | 1 | 1 | 2.3 | 56284530 | 39993797 | tier2 | Out-of-frame | 13086 | NA | 0.35495 |
| BRCA | TCGA-BH-A1FE-01A | TCGA-BH-A1FE | PMEPA1|PIGP | PMEPA1 | PIGP | 20 | 21 | -1 | -1 | 63 | 67 | 62 | 0.59 | 56284530 | 38444837 | tier1 | CDS-5UTR | 13088 | NA | 0.35242 |
| BRCA | TCGA-AR-A0TX-01A | TCGA-AR-A0TX | PMEPA1|PTGIS | PMEPA1 | PTGIS | 20 | 20 | -1 | -1 | 42 | 26 | 26 | 1.2 | 56284530 | 48130932 | tier1 | Out-of-frame | 13089 | non-validated | 0.35437 |
| BRCA | TCGA-AC-A62V-01A | TCGA-AC-A62V | PMEPA1|RALY | PMEPA1 | RALY | 20 | 20 | -1 | 1 | 30 | 22 | 18 | 0.002 | 56284530 | 32619328 | tier2 | CDS-5UTR | 13090 | NA | 0.36307 |
| BRCA | TCGA-AC-A5XS-01A | TCGA-AC-A5XS | POLR1C|MDGA1 | POLR1C | MDGA1 | 6 | 6 | 1 | -1 | 7 | 6 | 4 | 0.52 | 43487576 | 37631882 | tier1 | In-frame | 13168 | NA | 0.36565 |
| BRCA | TCGA-LL-A740-01A | TCGA-LL-A740 | POU6F1|SMAGP | POU6F1 | SMAGP | 12 | 12 | -1 | -1 | 2 | 4 | 4 | 0.2 | 51611426 | 51640615 | tier4 | 5UTR-CDS | 13202 | NA | 0.34289 |
| BRCA | TCGA-AR-A24V-01A | TCGA-AR-A24V | PPFIA1|C11orf24 | PPFIA1 | C11orf24 | 11 | 11 | 1 | -1 | 45 | 29 | 26 | 0.11 | 70118542 | 68030386 | tier1 | Out-of-frame | 13248 | NA | 0 |
| BRCA | TCGA-BH-A0C3-01A | TCGA-BH-A0C3 | PPFIA1|LRP5 | PPFIA1 | LRP5 | 11 | 11 | 1 | 1 | 18 | 22 | 14 | 0.28 | 70222706 | 68178904 | tier1 | Out-of-frame | 13254 | NA | 0.37486 |
| BRCA | TCGA-A2-A1G4-01A | TCGA-A2-A1G4 | PPFIA1|MARK2 | PPFIA1 | MARK2 | 11 | 11 | 1 | 1 | 30 | 17 | 16 | 0.25 | 70118542 | 63662631 | tier1 | In-frame | 13255 | NA | 0.38619 |
| BRCA | TCGA-B6-A0RI-01A | TCGA-B6-A0RI | PPIG|CRIM1 | PPIG | CRIM1 | 2 | 2 | 1 | 1 | 47 | 31 | 30 | 0.39 | 170441000 | 36726362 | tier1 | 5UTR-CDS | 13293 | NA | 0.36909 |
|
Showing page 61 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.