Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AN-A0XU-01A | TCGA-AN-A0XU | PHYHD1|LRRC8A | PHYHD1 | LRRC8A | 9 | 9 | 1 | 1 | 3 | 3 | 3 | 1.2 | 131689475 | 131678375 | tier1 | In-frame | 12774 | NA | 0.33483 |
| BRCA | TCGA-C8-A12W-01A | TCGA-C8-A12W | PI4KA|FAM19A5 | PI4KA | FAM19A5 | 22 | 22 | -1 | 1 | 8 | 7 | 7 | 0.18 | 21147481 | 49103529 | tier1 | Out-of-frame | 12782 | NA | 0.36142 |
| BRCA | TCGA-BH-A18L-01A | TCGA-BH-A18L | PICALM|RP11-849H4.2 | PICALM | RP11-849H4.2 | 11 | 11 | -1 | -1 | 13 | 11 | 7 | 2.8 | 85711686 | 71576900 | tier1 | NA | 12802 | NA | 0.34408 |
| BRCA | TCGA-B6-A0IJ-01A | TCGA-B6-A0IJ | PICK1|POLR2F | PICK1 | POLR2F | 22 | 22 | 1 | 1 | 27 | 21 | 19 | 2 | 38453857 | 38352780 | tier1 | In-frame | 12806 | non-validated | 0.37509 |
| BRCA | TCGA-LL-A6FP-01A | TCGA-LL-A6FP | PIGK|ST6GALNAC3 | PIGK | ST6GALNAC3 | 1 | 1 | -1 | 1 | 4 | 3 | 2 | 0.026 | 77620134 | 76877693 | tier1 | Out-of-frame | 12811 | NA | 0.34241 |
| BRCA | TCGA-E9-A1N9-01A | TCGA-E9-A1N9 | PIGN|CTNNA2 | PIGN | CTNNA2 | 18 | 2 | -1 | 1 | 29 | 23 | 18 | 2.6 | 59768308 | 80874710 | tier1 | Out-of-frame | 12815 | NA | 0.34849 |
| BRCA | TCGA-E2-A1B1-01A | TCGA-E2-A1B1 | PIGU|PTPRT | PIGU | PTPRT | 20 | 20 | -1 | -1 | 8 | 6 | 4 | 0.061 | 33162908 | 40911165 | tier4 | In-frame | 12824 | NA | 0.35129 |
| BRCA | TCGA-AQ-A04J-01A | TCGA-AQ-A04J | PIGZ|EPHB3 | PIGZ | EPHB3 | 3 | 3 | -1 | 1 | 2 | 1 | 1 | 0.12 | 196678692 | 184289106 | tier3 | In-frame | 12826 | non-validated | 0.37775 |
| BRCA | TCGA-BH-A18T-01A | TCGA-BH-A18T | PIK3C2A|RP11-113D6.6 | PIK3C2A | RP11-113D6.6 | 11 | 11 | -1 | -1 | 15 | 7 | 5 | 0.085 | 17115808 | 18162158 | tier1 | In-frame | 12829 | NA | 0.35141 |
| BRCA | TCGA-A1-A0SN-01A | TCGA-A1-A0SN | PILRB|MAGI2 | PILRB | MAGI2 | 7 | 7 | 1 | -1 | 7 | 3 | 3 | 0.073 | 99954506 | 77824380 | tier1 | 5UTR-CDS | 12856 | NA | 0.37348 |
| BRCA | TCGA-AC-A2FB-01A | TCGA-AC-A2FB | PIP4K2B|SLC6A4 | PIP4K2B | SLC6A4 | 17 | 17 | -1 | -1 | 7 | 7 | 5 | 0.11 | 36943076 | 28549933 | tier1 | CDS-5UTR | 12867 | NA | 0.36761 |
| BRCA | TCGA-BH-A0B7-01A | TCGA-BH-A0B7 | PIP4K2B|TMEM132E | PIP4K2B | TMEM132E | 17 | 17 | -1 | 1 | 6 | 6 | 4 | 0.07 | 36955519 | 32953146 | tier1 | Out-of-frame | 12868 | NA | 0.36647 |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | PIP5K1A|MLLT11 | PIP5K1A | MLLT11 | 1 | 1 | 1 | 1 | 191 | 163 | 151 | 0.16 | 151171557 | 151039695 | tier1 | CDS-5UTR | 12871 | non-validated | 0.36779 |
| BRCA | TCGA-OL-A5D7-01A | TCGA-OL-A5D7 | PIP5K1C|PALM | PIP5K1C | PALM | 19 | 19 | -1 | 1 | 34 | 35 | 33 | 0.042 | 3660964 | 746285 | tier1 | Out-of-frame | 12879 | NA | 0.35568 |
| BRCA | TCGA-A7-A4SE-01A | TCGA-A7-A4SE | PKMYT1|CLDN6 | PKMYT1 | CLDN6 | 16 | 16 | -1 | -1 | 53 | 30 | 25 | 1.7 | 3029649 | 3068485 | tier1 | CDS-5UTR | 12919 | NA | 0.37912 |
| BRCA | TCGA-C8-A26W-01A | TCGA-C8-A26W | PKN1|LDLR | PKN1 | LDLR | 19 | 19 | 1 | 1 | 13 | 8 | 8 | 0.58 | 14557373 | 11226770 | tier1 | Out-of-frame | 12922 | NA | 0.39013 |
| BRCA | TCGA-AN-A0FV-01A | TCGA-AN-A0FV | PKN2|COL24A1 | PKN2 | COL24A1 | 1 | 1 | 1 | -1 | 2 | 2 | 2 | 0.43 | 89150311 | 86453337 | tier2 | In-frame | 12923 | NA | 0.38651 |
| BRCA | TCGA-EW-A6SD-01A | TCGA-EW-A6SD | PKP2|DNM1L | PKP2 | DNM1L | 12 | 12 | -1 | 1 | 35 | 32 | 27 | 0.71 | 32993962 | 32895523 | tier1 | In-frame | 12928 | NA | 0.3733 |
| BRCA | TCGA-E2-A1L7-01A | TCGA-E2-A1L7 | PLA2G6|TMEM184B | PLA2G6 | TMEM184B | 22 | 22 | -1 | -1 | 2 | 3 | 3 | 0.003 | 38565225 | 38622877 | tier3 | Out-of-frame | 12939 | NA | 0.349 |
| BRCA | TCGA-E9-A248-01A | TCGA-E9-A248 | PLD3|SIRT2 | PLD3 | SIRT2 | 19 | 19 | 1 | -1 | 9 | 14 | 10 | 0.046 | 40854675 | 39384507 | tier1 | 5UTR-CDS | 12982 | NA | 0.363 |
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