Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-D8-A27W-01A | TCGA-D8-A27W | PAWR|CLEC2A | PAWR | CLEC2A | 12 | 12 | -1 | -1 | 5 | 6 | 4 | 3.6 | 80083509 | 10069402 | tier1 | In-frame | 12318 | NA | 0.36768 |
| BRCA | TCGA-B6-A408-01A | TCGA-B6-A408 | PAWR|PTPRR | PAWR | PTPRR | 12 | 12 | -1 | -1 | 13 | 15 | 15 | 0.027 | 80083509 | 71092129 | tier1 | In-frame | 12321 | NA | 0.377 |
| BRCA | TCGA-GI-A2C8-01A | TCGA-GI-A2C8 | PBX1|LRRC52 | PBX1 | LRRC52 | 1 | 1 | 1 | 1 | 74 | 68 | 59 | 0.092 | 164532548 | 165532742 | tier1 | In-frame | 12346 | NA | 0.36807 |
| BRCA | TCGA-C8-A278-01A | TCGA-C8-A278 | PBX1|RHBG | PBX1 | RHBG | 1 | 1 | 1 | 1 | 26 | 21 | 20 | 0.011 | 164781386 | 156354318 | tier1 | In-frame | 12348 | NA | 0.36726 |
| BRCA | TCGA-A8-A08P-01A | TCGA-A8-A08P | PCCB|DLG1 | PCCB | DLG1 | 3 | 3 | 1 | -1 | 14 | 15 | 15 | 0.026 | 136048826 | 196921460 | tier1 | In-frame | 12385 | NA | 0.37813 |
| BRCA | TCGA-E9-A229-01A | TCGA-E9-A229 | PCDH15|DUSP13 | PCDH15 | DUSP13 | 10 | 10 | -1 | -1 | 19 | 18 | 14 | 2 | 56077031 | 76863855 | tier1 | CDS-3UTR | 12386 | NA | 0.36751 |
| BRCA | TCGA-D8-A13Z-01A | TCGA-D8-A13Z | PCDHA11|ANKHD1 | PCDHA11 | ANKHD1 | 5 | 5 | 1 | 1 | 11 | 9 | 9 | 0.45 | 140251079 | 139892948 | tier1 | In-frame | 12388 | NA | 0.36252 |
| BRCA | TCGA-B6-A402-01A | TCGA-B6-A402 | PCNT|MCOLN1 | PCNT | MCOLN1 | 21 | 19 | 1 | 1 | 11 | 23 | 20 | 0.25 | 47811291 | 7598409 | tier1 | Out-of-frame | 12427 | NA | 0.35686 |
| BRCA | TCGA-EW-A1OV-01A | TCGA-EW-A1OV | PCNXL2|COG2 | PCNXL2 | COG2 | 1 | 1 | -1 | 1 | 5 | 5 | 2 | 0.21 | 233296029 | 230819320 | tier1 | Out-of-frame | 12433 | NA | 0.34087 |
| BRCA | TCGA-AR-A24Z-01A | TCGA-AR-A24Z | PCNXL2|PTPN14 | PCNXL2 | PTPN14 | 1 | 1 | -1 | -1 | 16 | 9 | 8 | 0.083 | 233270759 | 214638300 | tier1 | CDS-5UTR | 12434 | validated | 0.36113 |
| BRCA | TCGA-AR-A1AH-01A | TCGA-AR-A1AH | PCNXL2|TAOK3 | PCNXL2 | TAOK3 | 1 | 12 | -1 | -1 | 13 | 9 | 6 | 0.31 | 233270759 | 118639268 | tier1 | In-frame | 12435 | NA | 0.37769 |
| BRCA | TCGA-AN-A0XV-01A | TCGA-AN-A0XV | PDE7A|NKAIN3 | PDE7A | NKAIN3 | 8 | 8 | -1 | 1 | 19 | 7 | 5 | 0.074 | 66753606 | 63492098 | tier1 | In-frame | 12510 | NA | 0.34245 |
| BRCA | TCGA-LL-A7T0-01A | TCGA-LL-A7T0 | PDLIM5|ART3 | PDLIM5 | ART3 | 4 | 4 | 1 | 1 | 7 | 4 | 4 | 1.2 | 95376535 | 76997034 | tier1 | CDS-5UTR | 12555 | NA | 0.3771 |
| BRCA | TCGA-LL-A7T0-01A | TCGA-LL-A7T0 | PDLIM5|SHISA5 | PDLIM5 | SHISA5 | 4 | 3 | 1 | -1 | 13 | 8 | 8 | 0.15 | 95539342 | 48538726 | tier1 | In-frame | 12558 | NA | 0.37862 |
| BRCA | TCGA-A2-A1FV-01A | TCGA-A2-A1FV | PEBP4|UNC5D | PEBP4 | UNC5D | 8 | 8 | -1 | 1 | 2 | 4 | 4 | 0.95 | 22582356 | 35406810 | tier2 | In-frame | 12595 | NA | 0.37003 |
| BRCA | TCGA-BH-A1F6-01A | TCGA-BH-A1F6 | PELI1|APLF | PELI1 | APLF | 2 | 2 | -1 | 1 | 2 | 4 | 4 | 1.8 | 64371215 | 68794473 | tier2 | 5UTR-CDS | 12597 | NA | 0.35994 |
| BRCA | TCGA-D8-A27W-01A | TCGA-D8-A27W | PEX5|CLSTN3 | PEX5 | CLSTN3 | 12 | 12 | 1 | 1 | 3 | 2 | 2 | 0.14 | 7344296 | 7310085 | tier1 | In-frame | 12633 | NA | 0.3597 |
| BRCA | TCGA-E9-A228-01A | TCGA-E9-A228 | PGAP1|SPAG16 | PGAP1 | SPAG16 | 2 | 2 | -1 | 1 | 127 | 104 | 92 | 0.84 | 197781142 | 215274864 | tier2 | Out-of-frame | 12649 | NA | 0.34093 |
| BRCA | TCGA-E9-A228-01A | TCGA-E9-A228 | PGAP1|VWC2L | PGAP1 | VWC2L | 2 | 2 | -1 | 1 | 2 | 4 | 3 | 0.14 | 197781142 | 215301353 | tier2 | In-frame | 12650 | NA | 0.32421 |
| BRCA | TCGA-A7-A5ZV-01A | TCGA-A7-A5ZV | PHIP|INADL | PHIP | INADL | 6 | 1 | -1 | 1 | 10 | 9 | 8 | 0.042 | 79707131 | 62271120 | tier1 | Out-of-frame | 12745 | NA | 0.3741 |
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