Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A2-A0SV-01A | TCGA-A2-A0SV | OSTM1|SNX3 | OSTM1 | SNX3 | 6 | 6 | -1 | -1 | 23 | 10 | 10 | 0.97 | 108395454 | 108544249 | tier1 | In-frame | 12109 | NA | 0.34826 |
| BRCA | TCGA-C8-A1HN-01A | TCGA-C8-A1HN | OVOL2|KIAA0922 | OVOL2 | KIAA0922 | 20 | 4 | -1 | 1 | 9 | 6 | 4 | 0.9 | 18037301 | 154553870 | tier1 | Out-of-frame | 12119 | NA | 0.34971 |
| BRCA | TCGA-AR-A0TZ-01A | TCGA-AR-A0TZ | OXNAD1|LRRTM4 | OXNAD1 | LRRTM4 | 3 | 2 | 1 | -1 | 27 | 19 | 18 | 0.51 | 16327955 | 76976042 | tier1 | Out-of-frame | 12123 | NA | 0.34466 |
| BRCA | TCGA-AC-A6IX-01A | TCGA-AC-A6IX | OXR1|CSMD3 | OXR1 | CSMD3 | 8 | 8 | 1 | -1 | 9 | 4 | 3 | 2.1 | 107726213 | 114327022 | tier1 | Out-of-frame | 12124 | NA | 0.34727 |
| BRCA | TCGA-D8-A1JI-01A | TCGA-D8-A1JI | P4HB|PLEKHA5 | P4HB | PLEKHA5 | 17 | 12 | -1 | 1 | 2 | 27 | 20 | 0.049 | 79801037 | 19441012 | tier4 | NA | 12151 | NA | 0.36753 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | PACSIN2|NUPL2 | PACSIN2 | NUPL2 | 22 | 7 | -1 | 1 | 15 | 10 | 10 | 0.72 | 43308027 | 23224689 | tier1 | Out-of-frame | 12176 | NA | 0.36235 |
| BRCA | TCGA-AR-A24Z-01A | TCGA-AR-A24Z | PACSIN2|ZNF823 | PACSIN2 | ZNF823 | 22 | 19 | -1 | -1 | 19 | 14 | 10 | 3.3 | 43308027 | 11836142 | tier2 | In-frame | 12183 | validated | 0.36686 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | PAK1|ARHGEF18 | PAK1 | ARHGEF18 | 11 | 19 | -1 | 1 | 2 | 4 | 2 | 0.063 | 77043775 | 7521213 | tier2 | Out-of-frame | 12198 | NA | 0.37554 |
| BRCA | TCGA-XX-A899-01A | TCGA-XX-A899 | PAK1|CWF19L2 | PAK1 | CWF19L2 | 11 | 11 | -1 | -1 | 20 | 21 | 19 | 1.5 | 77184597 | 107326502 | tier2 | 5UTR-CDS | 12201 | NA | 0.37971 |
| BRCA | TCGA-LL-A441-01A | TCGA-LL-A441 | PAK1|ERG | PAK1 | ERG | 11 | 21 | -1 | -1 | 2 | 1 | 1 | 2.3 | 77184597 | 39956869 | tier2 | 5UTR-5UTR | 12202 | NA | 0.38572 |
| BRCA | TCGA-AN-A03Y-01A | TCGA-AN-A03Y | PAK1|KCTD14 | PAK1 | KCTD14 | 11 | 11 | -1 | -1 | 107 | 42 | 40 | 0.78 | 77090286 | 77749804 | tier1 | CDS-5UTR | 12203 | NA | 0.37752 |
| BRCA | TCGA-BH-A201-01A | TCGA-BH-A201 | PAK1|MYO7A | PAK1 | MYO7A | 11 | 11 | -1 | 1 | 11 | 27 | 23 | 0.023 | 77184597 | 76841635 | tier2 | 5UTR-5UTR | 12205 | NA | 0.38488 |
| BRCA | TCGA-E2-A10E-01A | TCGA-E2-A10E | PAK1|PRSS23 | PAK1 | PRSS23 | 11 | 11 | -1 | 1 | 5 | 3 | 3 | 1.9 | 77103376 | 86534419 | tier1 | CDS-5UTR | 12208 | NA | 0.37762 |
| BRCA | TCGA-XX-A899-01A | TCGA-XX-A899 | PAK1|SHANK2 | PAK1 | SHANK2 | 11 | 11 | -1 | -1 | 48 | 44 | 43 | 0.098 | 77184597 | 70507783 | tier1 | 5UTR-CDS | 12209 | NA | 0.38168 |
| BRCA | TCGA-E2-A1LS-01A | TCGA-E2-A1LS | PAK1|THRSP | PAK1 | THRSP | 11 | 11 | -1 | 1 | 18 | 55 | 51 | 0.013 | 77184597 | 77778705 | tier1 | 5UTR-3UTR | 12210 | NA | 0.37325 |
| BRCA | TCGA-EW-A2FV-01A | TCGA-EW-A2FV | PAK4|SPINT2 | PAK4 | SPINT2 | 19 | 19 | 1 | 1 | 27 | 71 | 49 | 0.18 | 39616559 | 38774267 | tier2 | 5UTR-CDS | 12221 | NA | 0.38098 |
| BRCA | TCGA-BH-A1EW-01A | TCGA-BH-A1EW | PARD3|ARMC3 | PARD3 | ARMC3 | 10 | 10 | -1 | 1 | 4 | 1 | 1 | 0.6 | 34558585 | 23220925 | tier3 | CDS-5UTR | 12266 | NA | 0.37907 |
| BRCA | TCGA-OL-A66P-01A | TCGA-OL-A66P | PARD3|CUL2 | PARD3 | CUL2 | 10 | 10 | -1 | -1 | 3 | 3 | 3 | 0.26 | 34985246 | 35305322 | tier1 | Out-of-frame | 12270 | NA | 0.38178 |
| BRCA | TCGA-A2-A0T7-01A | TCGA-A2-A0T7 | PARD6B|CD48 | PARD6B | CD48 | 20 | 1 | 1 | -1 | 2 | 1 | 1 | 0.084 | 49354616 | 160654979 | tier3 | In-frame | 12286 | NA | 0.37194 |
| BRCA | TCGA-B6-A0RI-01A | TCGA-B6-A0RI | PARN|ABCA3 | PARN | ABCA3 | 16 | 16 | -1 | -1 | 2 | 3 | 3 | 0.058 | 14576495 | 2379855 | tier2 | CDS-5UTR | 12294 | NA | 0.35934 |
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