Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A18V-01A | TCGA-BH-A18V | NRP2|PARD3B | NRP2 | PARD3B | 2 | 2 | 1 | 1 | 31 | 33 | 31 | 0.56 | 206631527 | 206480180 | tier1 | Out-of-frame | 11760 | NA | 0.37756 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | NSD1|CDH23 | NSD1 | CDH23 | 5 | 10 | 1 | 1 | 35 | 48 | 17 | 0.42 | 176563031 | 73434869 | tier1 | In-frame | 11773 | NA | 0.37712 |
| BRCA | TCGA-AN-A0XW-01A | TCGA-AN-A0XW | NSRP1|SKAP1 | NSRP1 | SKAP1 | 17 | 17 | 1 | -1 | 3 | 4 | 4 | 0.14 | 28443881 | 46474147 | tier1 | Out-of-frame | 11811 | NA | 0.37315 |
| BRCA | TCGA-D8-A1XD-01A | TCGA-D8-A1XD | NTRK2|RASEF | NTRK2 | RASEF | 9 | 9 | 1 | -1 | 2 | 1 | 1 | 0.47 | 87570432 | 85597697 | tier2 | Out-of-frame | 11840 | NA | 0.38743 |
| BRCA | TCGA-A1-A0SP-01A | TCGA-A1-A0SP | NUBP1|UMODL1 | NUBP1 | UMODL1 | 16 | 21 | 1 | 1 | 9 | 5 | 5 | 0.24 | 10851884 | 43508404 | tier2 | In-frame | 11848 | NA | 0.35192 |
| BRCA | TCGA-E2-A1LH-01A | TCGA-E2-A1LH | NUDCD1|TMEM184C | NUDCD1 | TMEM184C | 8 | 4 | -1 | 1 | 2 | 3 | 1 | 0.052 | 110334538 | 148544985 | tier3 | In-frame | 11859 | NA | 0.34255 |
| BRCA | TCGA-E9-A1N9-01A | TCGA-E9-A1N9 | NUP188|ASTN2 | NUP188 | ASTN2 | 9 | 9 | 1 | -1 | 11 | 13 | 13 | 0.023 | 131735528 | 119382722 | tier1 | In-frame | 11922 | NA | 0.34214 |
| BRCA | TCGA-A8-A06U-01A | TCGA-A8-A06U | NUP98|TMEM117 | NUP98 | TMEM117 | 11 | 12 | -1 | 1 | 6 | 3 | 2 | 2.4 | 3774546 | 44770378 | tier1 | Out-of-frame | 11956 | NA | 0.36245 |
| BRCA | TCGA-BH-A0DS-01A | TCGA-BH-A0DS | ODF2|SLC2A8 | ODF2 | SLC2A8 | 9 | 9 | 1 | 1 | 9 | 10 | 9 | 3.5 | 131250304 | 130169715 | tier1 | NA | 12003 | NA | 0.34924 |
| BRCA | TCGA-BH-A0HY-01A | TCGA-BH-A0HY | ODZ4|INTS4 | ODZ4 | INTS4 | 11 | 11 | -1 | -1 | 266 | 120 | 107 | 0.13 | 78600830 | 77594998 | tier1 | Out-of-frame | 12012 | NA | 0.34948 |
| BRCA | TCGA-BH-A1EN-01A | TCGA-BH-A1EN | ODZ4|RBM4 | ODZ4 | RBM4 | 11 | 11 | -1 | 1 | 9 | 8 | 8 | 4 | 78775783 | 66433327 | tier1 | In-frame | 12013 | NA | 0.36937 |
| BRCA | TCGA-A8-A0A9-01A | TCGA-A8-A0A9 | ODZ4|TMTC2 | ODZ4 | TMTC2 | 11 | 12 | -1 | 1 | 5 | 1 | 1 | 0.26 | 78372494 | 83324210 | tier2 | Out-of-frame | 12014 | NA | 0.35219 |
| BRCA | TCGA-AR-A254-01A | TCGA-AR-A254 | OPRL1|PRPF6 | OPRL1 | PRPF6 | 20 | 20 | 1 | 1 | 56 | 38 | 25 | 0.03 | 62711705 | 62641553 | tier1 | 5UTR-CDS | 12041 | NA | 0.37351 |
| BRCA | TCGA-A1-A0SN-01A | TCGA-A1-A0SN | ORMDL3|ANXA1 | ORMDL3 | ANXA1 | 17 | 9 | -1 | 1 | 2 | 5 | 2 | 0.61 | 38077294 | 75772570 | tier4 | 3UTR-5UTR | 12055 | NA | 0.37442 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | OSBPL2|PLD1 | OSBPL2 | PLD1 | 20 | 3 | 1 | -1 | 9 | 6 | 6 | 0.019 | 60838747 | 171338310 | tier1 | Out-of-frame | 12076 | NA | 0.37249 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | OSBPL3|CORIN | OSBPL3 | CORIN | 7 | 4 | -1 | -1 | 6 | 4 | 4 | 0.34 | 24931996 | 47746600 | tier1 | Out-of-frame | 12079 | NA | 0.37058 |
| BRCA | TCGA-BH-A208-01A | TCGA-BH-A208 | OSBPL3|GABRG3 | OSBPL3 | GABRG3 | 7 | 15 | -1 | 1 | 4 | 2 | 1 | 1.7 | 25019505 | 27725796 | tier3 | 5UTR-CDS | 12080 | NA | 0.36831 |
| BRCA | TCGA-AO-A129-01A | TCGA-AO-A129 | OSBPL5|GPR114 | OSBPL5 | GPR114 | 11 | 16 | -1 | 1 | 2 | 2 | 2 | 0.15 | 3140777 | 57595968 | tier3 | CDS-5UTR | 12082 | NA | 0.34954 |
| BRCA | TCGA-GM-A2DI-01A | TCGA-GM-A2DI | OSBPL8|PTPRR | OSBPL8 | PTPRR | 12 | 12 | -1 | -1 | 4 | 2 | 1 | 0.26 | 76953177 | 71158558 | tier4 | 5UTR-CDS | 12090 | NA | 0.37469 |
| BRCA | TCGA-E9-A1RF-01A | TCGA-E9-A1RF | OSTM1|C6orf204 | OSTM1 | C6orf204 | 6 | 6 | -1 | -1 | 13 | 6 | 6 | 0.35 | 108395454 | 118953774 | tier4 | Out-of-frame | 12108 | NA | 0 |
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