Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-B6-A0I9-01A | TCGA-B6-A0I9 | NF1|ABCB5 | NF1 | ABCB5 | 17 | 7 | 1 | 1 | 8 | 6 | 5 | 2.6 | 29676269 | 20671682 | tier1 | In-frame | 11392 | NA | 0.37336 |
| BRCA | TCGA-C8-A1HO-01A | TCGA-C8-A1HO | NF1|CACNA1G | NF1 | CACNA1G | 17 | 17 | 1 | 1 | 4 | 2 | 2 | 0.29 | 29592357 | 48676789 | tier1 | Out-of-frame | 11402 | NA | 0.37322 |
| BRCA | TCGA-AR-A252-01A | TCGA-AR-A252 | NF1|CLTC | NF1 | CLTC | 17 | 17 | 1 | 1 | 22 | 11 | 8 | 0.99 | 29563039 | 57721637 | tier1 | Out-of-frame | 11404 | NA | 0.3813 |
| BRCA | TCGA-EW-A1PH-01A | TCGA-EW-A1PH | NF2|CLTCL1 | NF2 | CLTCL1 | 22 | 22 | 1 | -1 | 9 | 4 | 3 | 0.34 | 30079053 | 19171124 | tier1 | 3UTR-CDS | 11419 | non-validated | 0.37955 |
| BRCA | TCGA-V7-A7HQ-01A | TCGA-V7-A7HQ | NF2|EIF3D | NF2 | EIF3D | 22 | 22 | 1 | -1 | 6 | 8 | 6 | 5.6 | 30000101 | 36908649 | tier1 | In-frame | 11420 | NA | 0.3789 |
| BRCA | TCGA-A2-A0SV-01A | TCGA-A2-A0SV | NF2|GRAP2 | NF2 | GRAP2 | 22 | 22 | 1 | 1 | 50 | 39 | 35 | 0.24 | 30035201 | 40351823 | tier1 | In-frame | 11421 | NA | 0.38354 |
| BRCA | TCGA-GI-A2C9-01A | TCGA-GI-A2C9 | NF2|HSD3B2 | NF2 | HSD3B2 | 22 | 1 | 1 | 1 | 8 | 5 | 5 | 1.3 | 30000101 | 119957954 | tier1 | CDS-5UTR | 11422 | non-validated | 0.38114 |
| BRCA | TCGA-AN-A04D-01A | TCGA-AN-A04D | NFASC|RP5-862P8.2 | NFASC | RP5-862P8.2 | 1 | 1 | 1 | 1 | 2 | 3 | 2 | 2.2 | 204926954 | 233507784 | tier3 | In-frame | 11431 | non-validated | 0.36203 |
| BRCA | TCGA-AO-A1KT-01A | TCGA-AO-A1KT | NFIA|ST6GALNAC3 | NFIA | ST6GALNAC3 | 1 | 1 | 1 | 1 | 2 | 3 | 3 | 0.19 | 61872399 | 77042531 | tier3 | Out-of-frame | 11470 | NA | 0.35387 |
| BRCA | TCGA-E9-A229-01A | TCGA-E9-A229 | NFRKB|NOX4 | NFRKB | NOX4 | 11 | 11 | -1 | -1 | 4 | 1 | 1 | 2.7 | 129755330 | 89135710 | tier2 | Out-of-frame | 11516 | NA | 0.34849 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | NIPAL2|RNF19A | NIPAL2 | RNF19A | 8 | 8 | -1 | -1 | 11 | 1 | 1 | 2.5 | 99215336 | 101325600 | tier2 | NA | 11547 | NA | 0.36457 |
| BRCA | TCGA-B6-A0I9-01A | TCGA-B6-A0I9 | NIPSNAP3A|TMEFF1 | NIPSNAP3A | TMEFF1 | 9 | 9 | 1 | 1 | 13 | 4 | 4 | 0.53 | 107510133 | 103310026 | tier1 | Out-of-frame | 11574 | NA | 0.35935 |
| BRCA | TCGA-E2-A14Y-01A | TCGA-E2-A14Y | NKAIN3|SLCO5A1 | NKAIN3 | SLCO5A1 | 8 | 8 | 1 | -1 | 2 | 3 | 3 | 0.27 | 63659688 | 70650439 | tier2 | Out-of-frame | 11582 | NA | 0.3427 |
| BRCA | TCGA-AR-A1AI-01A | TCGA-AR-A1AI | NMUR1|PDE6D | NMUR1 | PDE6D | 2 | 2 | -1 | -1 | 2 | 5 | 5 | 0.48 | 232395070 | 232603912 | tier4 | NA | 11625 | NA | 0.36514 |
| BRCA | TCGA-A2-A0CX-01A | TCGA-A2-A0CX | NOL7|ERVFRD-1 | NOL7 | ERVFRD-1 | 6 | 6 | 1 | -1 | 191 | 106 | 91 | 0.13 | 13618033 | 11105863 | tier1 | CDS-5UTR | 11635 | NA | 0.32678 |
| BRCA | TCGA-B6-A402-01A | TCGA-B6-A402 | NOTCH3|C3 | NOTCH3 | C3 | 19 | 19 | -1 | -1 | 2 | 1 | 1 | 0.42 | 15270445 | 6720693 | tier2 | 3UTR-5UTR | 11672 | NA | 0.37754 |
| BRCA | TCGA-BH-A0AV-01A | TCGA-BH-A0AV | NPTN|CLUAP1 | NPTN | CLUAP1 | 15 | 16 | -1 | 1 | 275 | 531 | 493 | 1.7 | 73879865 | 3580568 | tier2 | In-frame | 11707 | non-validated | 0.3477 |
| BRCA | TCGA-AC-A2QH-01B | TCGA-AC-A2QH | NRCAM|BNC2 | NRCAM | BNC2 | 7 | 9 | -1 | -1 | 3 | 3 | 3 | 0.12 | 108096687 | 16583083 | tier1 | 5UTR-CDS | 11735 | NA | 0.36459 |
| BRCA | TCGA-BH-A0H9-01A | TCGA-BH-A0H9 | NRG2|C5orf32 | NRG2 | C5orf32 | 5 | 5 | -1 | 1 | 16 | 26 | 26 | 0.61 | 139421955 | 139622890 | tier1 | In-frame | 11749 | NA | 0 |
| BRCA | TCGA-D8-A1JH-01A | TCGA-D8-A1JH | NRP1|VSTM4 | NRP1 | VSTM4 | 10 | 10 | -1 | -1 | 26 | 8 | 6 | 1.6 | 33619636 | 50227820 | tier1 | Out-of-frame | 11758 | NA | 0.36917 |
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