Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-E2-A1LB-01A | TCGA-E2-A1LB | MYO1D|TMIGD1 | MYO1D | TMIGD1 | 17 | 17 | -1 | -1 | 33 | 15 | 15 | 0.005 | 31203796 | 28656547 | tier1 | Out-of-frame | 10979 | NA | 0.36658 |
| BRCA | TCGA-D8-A1JM-01A | TCGA-D8-A1JM | MYO6|SENP6 | MYO6 | SENP6 | 6 | 6 | 1 | 1 | 2 | 3 | 2 | 0.004 | 76459140 | 76405520 | tier4 | 5UTR-CDS | 11004 | NA | 0.3713 |
| BRCA | TCGA-AO-A0JG-01A | TCGA-AO-A0JG | MYO7A|GAB2 | MYO7A | GAB2 | 11 | 11 | 1 | -1 | 2 | 3 | 2 | 0.13 | 76924080 | 77934722 | tier2 | In-frame | 11007 | NA | 0.39081 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | NAALADL2|FBXO45 | NAALADL2 | FBXO45 | 3 | 3 | 1 | 1 | 7 | 5 | 5 | 0.086 | 175189546 | 196304324 | tier1 | In-frame | 11050 | NA | 0.34347 |
| BRCA | TCGA-D8-A27M-01A | TCGA-D8-A27M | NAALADL2|NLGN1 | NAALADL2 | NLGN1 | 3 | 3 | 1 | 1 | 8 | 7 | 7 | 0.42 | 174577240 | 173322069 | tier1 | CDS-5UTR | 11053 | NA | 0.35619 |
| BRCA | TCGA-AO-A0JM-01A | TCGA-AO-A0JM | NAALADL2|PEX5L | NAALADL2 | PEX5L | 3 | 3 | 1 | -1 | 11 | 6 | 6 | 0.038 | 175189546 | 179537764 | tier1 | In-frame | 11055 | validated | 0.36303 |
| BRCA | TCGA-AO-A0JD-01A | TCGA-AO-A0JD | NAV2|CNTN5 | NAV2 | CNTN5 | 11 | 11 | 1 | 1 | 7 | 4 | 4 | 0.71 | 19968055 | 99196077 | tier1 | CDS-5UTR | 11107 | NA | 0.36969 |
| BRCA | TCGA-AR-A251-01A | TCGA-AR-A251 | NAV2|PACSIN3 | NAV2 | PACSIN3 | 11 | 11 | 1 | -1 | 13 | 24 | 21 | 0.79 | 20104725 | 47204620 | tier1 | CDS-5UTR | 11110 | NA | 0.36968 |
| BRCA | TCGA-C8-A274-01A | TCGA-C8-A274 | NBEAL2|TMC2 | NBEAL2 | TMC2 | 3 | 20 | 1 | 1 | 3 | 4 | 4 | 0.023 | 47021402 | 2559792 | tier1 | In-frame | 11128 | NA | 0.35245 |
| BRCA | TCGA-A7-A6VY-01A | TCGA-A7-A6VY | NCALD|SLC5A11 | NCALD | SLC5A11 | 8 | 16 | -1 | 1 | 4 | 2 | 2 | 0.37 | 102803090 | 24873922 | tier1 | 5UTR-CDS | 11138 | NA | 0.36569 |
| BRCA | TCGA-B6-A0X7-01A | TCGA-B6-A0X7 | NCOA4|OR13A1 | NCOA4 | OR13A1 | 10 | 10 | 1 | -1 | 8 | 9 | 6 | 0.96 | 51565296 | 45803256 | tier1 | 5UTR-5UTR | 11212 | NA | 0.36979 |
| BRCA | TCGA-A8-A091-01A | TCGA-A8-A091 | NCOA5|CDH4 | NCOA5 | CDH4 | 20 | 20 | -1 | 1 | 2 | 9 | 9 | 0.11 | 44708026 | 60318619 | tier2 | Out-of-frame | 11219 | NA | 0.36121 |
| BRCA | TCGA-AC-A3EH-01A | TCGA-AC-A3EH | NCOR2|ITGB5 | NCOR2 | ITGB5 | 12 | 3 | -1 | -1 | 18 | 16 | 16 | 1.4 | 125002686 | 124528003 | tier1 | NA | 11246 | NA | 0.38176 |
| BRCA | TCGA-B6-A0X1-01A | TCGA-B6-A0X1 | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 7 | 14 | 14 | 0.08 | 124904503 | 125302253 | tier1 | In-frame | 11256 | NA | 0.37966 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | NCSTN|ATP1A4 | NCSTN | ATP1A4 | 1 | 1 | 1 | 1 | 14 | 7 | 5 | 1.4 | 160314616 | 160145882 | tier1 | In-frame | 11266 | NA | 0.3648 |
| BRCA | TCGA-A1-A0SK-01A | TCGA-A1-A0SK | NEBL|TMEM26 | NEBL | TMEM26 | 10 | 10 | -1 | -1 | 7 | 4 | 3 | 0.04 | 21309046 | 63173293 | tier1 | Out-of-frame | 11320 | NA | 0.36684 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | NEDD4|ADAMTSL3 | NEDD4 | ADAMTSL3 | 15 | 15 | -1 | 1 | 3 | 1 | 1 | 0.54 | 56243574 | 84373141 | tier2 | In-frame | 11330 | NA | 0.37987 |
| BRCA | TCGA-AN-A0FW-01A | TCGA-AN-A0FW | NEDD4|RFX7 | NEDD4 | RFX7 | 15 | 15 | -1 | -1 | 3 | 1 | 1 | 0.53 | 56258671 | 56379707 | tier3 | Out-of-frame | 11332 | NA | 0.37623 |
| BRCA | TCGA-OL-A5RW-01A | TCGA-OL-A5RW | NEGR1|C1orf173 | NEGR1 | C1orf173 | 1 | 1 | -1 | -1 | 7 | 3 | 2 | 0.12 | 72748002 | 75114999 | tier1 | In-frame | 11345 | NA | 0 |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | NEK7|CRB1 | NEK7 | CRB1 | 1 | 1 | 1 | 1 | 4 | 7 | 7 | 0.11 | 198126406 | 197297552 | tier1 | 5UTR-CDS | 11361 | NA | 0.37001 |
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