Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A2-A0ES-01A | TCGA-A2-A0ES | MPP5|RAD51B | MPP5 | RAD51B | 14 | 14 | 1 | 1 | 8 | 9 | 9 | 0.51 | 67779427 | 69196525 | tier1 | CDS-3UTR | 10620 | NA | 0.36007 |
| BRCA | TCGA-E2-A1LL-01A | TCGA-E2-A1LL | MPP5|RDH11 | MPP5 | RDH11 | 14 | 14 | 1 | -1 | 13 | 9 | 9 | 0.15 | 67708250 | 68151921 | tier1 | 5UTR-CDS | 10621 | non-validated | 0.36786 |
| BRCA | TCGA-A2-A1FW-01A | TCGA-A2-A1FW | MPZL1|PDE4DIP | MPZL1 | PDE4DIP | 1 | 1 | 1 | -1 | 2 | 4 | 2 | 0.011 | 167691479 | 144946742 | tier2 | Out-of-frame | 10635 | NA | 0.36762 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | MSH2|SLC3A1 | MSH2 | SLC3A1 | 2 | 2 | 1 | 1 | 19 | 13 | 12 | 0.11 | 47637511 | 44539725 | tier1 | In-frame | 10700 | NA | 0.36673 |
| BRCA | TCGA-JL-A3YW-01A | TCGA-JL-A3YW | MSN|NLRC4 | MSN | NLRC4 | X | 2 | 1 | -1 | 15 | 15 | 14 | 1.8 | 64887720 | 32461408 | tier1 | In-frame | 10746 | NA | 0.37711 |
| BRCA | TCGA-GM-A2DC-01A | TCGA-GM-A2DC | MSRB2|C10orf112 | MSRB2 | C10orf112 | 10 | 10 | 1 | 1 | 5 | 9 | 8 | 1 | 23399247 | 19981211 | tier2 | In-frame | 10752 | NA | 0 |
| BRCA | TCGA-E2-A9RU-01A | TCGA-E2-A9RU | MTA2|CDHR5 | MTA2 | CDHR5 | 11 | 11 | -1 | -1 | 11 | 4 | 4 | 0.4 | 62362736 | 618111 | tier1 | In-frame | 10762 | NA | 0.37216 |
| BRCA | TCGA-EW-A1J1-01A | TCGA-EW-A1J1 | MTMR4|INSR | MTMR4 | INSR | 17 | 19 | -1 | -1 | 2 | 1 | 1 | 0.54 | 56581105 | 7267907 | tier2 | Out-of-frame | 10830 | NA | 0.39117 |
| BRCA | TCGA-E2-A1B0-01A | TCGA-E2-A1B0 | MYH9|ANKS1A | MYH9 | ANKS1A | 22 | 6 | -1 | 1 | 2 | 37 | 31 | 0.49 | 36677327 | 34977682 | tier3 | NA | 10894 | NA | 0.38303 |
| BRCA | TCGA-A2-A0YM-01A | TCGA-A2-A0YM | MYH9|CACNG2 | MYH9 | CACNG2 | 22 | 22 | -1 | -1 | 38 | 21 | 20 | 0.015 | 36722613 | 36962540 | tier1 | Out-of-frame | 10899 | NA | 0.38129 |
| BRCA | TCGA-BH-A0BW-01A | TCGA-BH-A0BW | MYH9|CACNG2 | MYH9 | CACNG2 | 22 | 22 | -1 | -1 | 148 | 117 | 108 | 0.015 | 36783852 | 36962540 | tier1 | 5UTR-CDS | 10900 | non-validated | 0.38129 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | MYH9|EIF3D | MYH9 | EIF3D | 22 | 22 | -1 | -1 | 35 | 30 | 28 | 0.047 | 36737415 | 36907833 | tier1 | Out-of-frame | 10904 | NA | 0.3782 |
| BRCA | TCGA-A7-A4SE-01A | TCGA-A7-A4SE | MYH9|FOXRED2 | MYH9 | FOXRED2 | 22 | 22 | -1 | -1 | 101 | 91 | 75 | 0.38 | 36783852 | 36886314 | tier1 | 5UTR-CDS | 10905 | NA | 0.37975 |
| BRCA | TCGA-A8-A09Q-01A | TCGA-A8-A09Q | MYH9|FOXRED2 | MYH9 | FOXRED2 | 22 | 22 | -1 | -1 | 147 | 107 | 95 | 0.38 | 36737415 | 36889850 | tier1 | In-frame | 10906 | NA | 0.37975 |
| BRCA | TCGA-B6-A0IJ-01A | TCGA-B6-A0IJ | MYH9|NFYC | MYH9 | NFYC | 22 | 1 | -1 | 1 | 197 | 209 | 201 | 0.052 | 36783852 | 41204508 | tier1 | 5UTR-5UTR | 10910 | non-validated | 0.3849 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | MYH9|PLA2G6 | MYH9 | PLA2G6 | 22 | 22 | -1 | -1 | 8 | 9 | 9 | 0.072 | 36783852 | 38565478 | tier1 | 5UTR-5UTR | 10912 | NA | 0.37903 |
| BRCA | TCGA-A7-A4SE-01A | TCGA-A7-A4SE | MYH9|TXN2 | MYH9 | TXN2 | 22 | 22 | -1 | -1 | 280 | 21 | 19 | 0.003 | 36783852 | 36876884 | tier1 | 5UTR-CDS | 10917 | NA | 0.37799 |
| BRCA | TCGA-AR-A0TU-01A | TCGA-AR-A0TU | MYO10|NPR3 | MYO10 | NPR3 | 5 | 5 | -1 | 1 | 2 | 6 | 6 | 2.1 | 16877718 | 32724804 | tier4 | Out-of-frame | 10942 | NA | 0.37019 |
| BRCA | TCGA-A2-A04X-01A | TCGA-A2-A04X | MYO1D|FAIM3 | MYO1D | FAIM3 | 17 | 1 | -1 | -1 | 8 | 13 | 7 | 0.1 | 30980861 | 207078492 | tier1 | In-frame | 10972 | validated | 0.3681 |
| BRCA | TCGA-AC-A3W5-01A | TCGA-AC-A3W5 | MYO1D|TMIGD1 | MYO1D | TMIGD1 | 17 | 17 | -1 | -1 | 2 | 1 | 1 | 0.005 | 31203796 | 28656547 | tier2 | Out-of-frame | 10978 | NA | 0.36658 |
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