Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-B6-A0IN-01A | TCGA-B6-A0IN | MED13|ITGA3 | MED13 | ITGA3 | 17 | 17 | -1 | 1 | 9 | 1 | 1 | 0.52 | 60059559 | 48141441 | tier2 | Out-of-frame | 10170 | NA | 0.37002 |
| BRCA | TCGA-A1-A0SN-01A | TCGA-A1-A0SN | MED13|KCNJ2 | MED13 | KCNJ2 | 17 | 17 | -1 | 1 | 44 | 39 | 39 | 0.16 | 60142501 | 68170965 | tier1 | CDS-5UTR | 10171 | NA | 0.3665 |
| BRCA | TCGA-B6-A0I6-01A | TCGA-B6-A0I6 | MET|CAV1 | MET | CAV1 | 7 | 7 | 1 | 1 | 20 | 8 | 8 | 0.18 | 116312631 | 116199000 | tier1 | 5UTR-CDS | 10256 | non-validated | 0.38279 |
| BRCA | TCGA-AR-A1AO-01A | TCGA-AR-A1AO | MET|DYNC1I1 | MET | DYNC1I1 | 7 | 7 | 1 | 1 | 4 | 8 | 8 | 2.4 | 116371913 | 95434033 | tier1 | CDS-5UTR | 10258 | NA | 0.38038 |
| BRCA | TCGA-A8-A07U-01A | TCGA-A8-A07U | MFSD1|GFM1 | MFSD1 | GFM1 | 3 | 3 | 1 | 1 | 13 | 7 | 6 | 1.1 | 158545126 | 158399784 | tier1 | In-frame | 10290 | NA | 0.34727 |
| BRCA | TCGA-A8-A06U-01A | TCGA-A8-A06U | MFSD6|CXorf66 | MFSD6 | CXorf66 | 2 | X | 1 | -1 | 7 | 9 | 9 | 0.22 | 191302287 | 139040376 | tier1 | Out-of-frame | 10296 | NA | 0 |
| BRCA | TCGA-C8-A12K-01A | TCGA-C8-A12K | MIB2|RP4-761I2.2 | MIB2 | RP4-761I2.2 | 1 | 6 | 1 | 1 | 49 | 25 | 19 | 6.8 | 1551994 | 11134636 | tier1 | Out-of-frame | 10338 | NA | 0.35638 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | MICU1|TSPAN3 | MICU1 | TSPAN3 | 10 | 15 | -1 | -1 | 23 | 25 | 25 | 1.2 | 74293504 | 77348597 | tier1 | In-frame | 10357 | NA | 0.34658 |
| BRCA | TCGA-BH-A0B7-01A | TCGA-BH-A0B7 | MIOS|ADAP1 | MIOS | ADAP1 | 7 | 7 | 1 | -1 | 3 | 6 | 6 | 3.5 | 7613827 | 975141 | tier1 | In-frame | 10377 | NA | 0.37238 |
| BRCA | TCGA-E9-A22A-01A | TCGA-E9-A22A | MKL2|CACNA1H | MKL2 | CACNA1H | 16 | 16 | 1 | 1 | 3 | 1 | 1 | 0.71 | 14234617 | 1250256 | tier2 | Out-of-frame | 10413 | NA | 0.36529 |
| BRCA | TCGA-AO-A124-01A | TCGA-AO-A124 | MLL3|CALN1 | MLL3 | CALN1 | 7 | 7 | -1 | -1 | 15 | 3 | 3 | 0.14 | 151859202 | 71571279 | tier2 | Out-of-frame | 10466 | validated | 0.37014 |
| BRCA | TCGA-BH-A0DI-01A | TCGA-BH-A0DI | MLL3|CNTNAP2 | MLL3 | CNTNAP2 | 7 | 7 | -1 | 1 | 4 | 4 | 4 | 0.5 | 152027686 | 146740999 | tier1 | Out-of-frame | 10468 | NA | 0.37603 |
| BRCA | TCGA-C8-A273-01A | TCGA-C8-A273 | MLL3|CNTNAP2 | MLL3 | CNTNAP2 | 7 | 7 | -1 | 1 | 17 | 13 | 10 | 0.5 | 152132711 | 146471363 | tier1 | Out-of-frame | 10469 | NA | 0.37603 |
| BRCA | TCGA-A2-A0CU-01A | TCGA-A2-A0CU | MLLT3|SLC28A3 | MLLT3 | SLC28A3 | 9 | 9 | -1 | -1 | 7 | 1 | 1 | 0.34 | 20456702 | 86928369 | tier2 | In-frame | 10518 | NA | 0.36133 |
| BRCA | TCGA-C8-A26X-01A | TCGA-C8-A26X | MLLT6|ACE | MLLT6 | ACE | 17 | 17 | 1 | 1 | 26 | 7 | 5 | 0.31 | 36868267 | 61573755 | tier1 | Out-of-frame | 10531 | NA | 0.3696 |
| BRCA | TCGA-AR-A2LJ-01A | TCGA-AR-A2LJ | MLLT6|KIRREL3 | MLLT6 | KIRREL3 | 17 | 11 | 1 | -1 | 8 | 2 | 2 | 0.085 | 36865828 | 126343361 | tier1 | Out-of-frame | 10532 | NA | 0.37034 |
| BRCA | TCGA-C8-A273-01A | TCGA-C8-A273 | MMD|C20orf112 | MMD | C20orf112 | 17 | 20 | -1 | -1 | 2 | 2 | 2 | 0.048 | 53485107 | 31115716 | tier2 | Out-of-frame | 10540 | NA | 0 |
| BRCA | TCGA-OL-A5S0-01A | TCGA-OL-A5S0 | MNAT1|C14orf135 | MNAT1 | C14orf135 | 14 | 14 | 1 | 1 | 4 | 3 | 3 | 0.01 | 61264878 | 60600688 | tier1 | Out-of-frame | 10555 | NA | 0 |
| BRCA | TCGA-BH-A5J0-01A | TCGA-BH-A5J0 | MOBKL1B|GRIN2A | MOBKL1B | GRIN2A | 2 | 16 | -1 | -1 | 2 | 1 | 1 | 0.1 | 74405788 | 9928087 | tier3 | Out-of-frame | 10563 | NA | 0.38209 |
| BRCA | TCGA-A2-A0YM-01A | TCGA-A2-A0YM | MPP5|GPHN | MPP5 | GPHN | 14 | 14 | 1 | 1 | 27 | 23 | 23 | 0.24 | 67708250 | 67610079 | tier1 | 5UTR-CDS | 10612 | NA | 0.36903 |
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