Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
BRCA | TCGA-A8-A08X-01A | TCGA-A8-A08X | MAPKAP1|PRRC2B | MAPKAP1 | PRRC2B | 9 | 9 | -1 | 1 | 17 | 17 | 13 | 0.4 | 128419930 | 134305477 | tier1 | CDS-5UTR | 9959 | NA | 0.35525 |
BRCA | TCGA-A8-A08X-01A | TCGA-A8-A08X | MAPKAP1|VAV2 | MAPKAP1 | VAV2 | 9 | 9 | -1 | -1 | 194 | 135 | 120 | 0.64 | 128419930 | 136726554 | tier1 | In-frame | 9961 | NA | 0.38647 |
BRCA | TCGA-A8-A0AD-01A | TCGA-A8-A0AD | MAPT|MARCH10 | MAPT | MARCH10 | 17 | 17 | 1 | -1 | 15 | 70 | 66 | 0.23 | 44039836 | 60865960 | tier1 | Out-of-frame | 9977 | NA | 0 |
BRCA | TCGA-A8-A097-01A | TCGA-A8-A097 | MARCH2|PLVAP | MARCH2 | PLVAP | 19 | 19 | 1 | -1 | 7 | 9 | 3 | 0.46 | 8486900 | 17477004 | tier1 | Out-of-frame | 9980 | NA | 0 |
BRCA | TCGA-A7-A4SB-01A | TCGA-A7-A4SB | MARK2|FAM168A | MARK2 | FAM168A | 11 | 11 | 1 | -1 | 35 | 18 | 15 | 0.35 | 63607032 | 73179537 | tier1 | CDS-5UTR | 10002 | NA | 0.38519 |
BRCA | TCGA-A8-A06U-01A | TCGA-A8-A06U | MARK3|BAG5 | MARK3 | BAG5 | 14 | 14 | 1 | -1 | 4 | 3 | 3 | 2.2 | 103894777 | 104027529 | tier1 | CDS-5UTR | 10003 | NA | 0.38136 |
BRCA | TCGA-B6-A0I9-01A | TCGA-B6-A0I9 | MARK3|RP11-407N17.3 | MARK3 | RP11-407N17.3 | 14 | 14 | 1 | 1 | 4 | 1 | 1 | 2 | 103852417 | 39716115 | tier2 | In-frame | 10008 | NA | 0.37909 |
BRCA | TCGA-GM-A2DD-01A | TCGA-GM-A2DD | MARK3|SLC25A21 | MARK3 | SLC25A21 | 14 | 14 | 1 | -1 | 2 | 4 | 4 | 1.3 | 103941547 | 37344209 | tier4 | Out-of-frame | 10009 | NA | 0.38088 |
BRCA | TCGA-A1-A0SQ-01A | TCGA-A1-A0SQ | MARK4|LYPD5 | MARK4 | LYPD5 | 19 | 19 | 1 | -1 | 15 | 10 | 9 | 0.01 | 45797710 | 44303986 | tier1 | Out-of-frame | 10010 | NA | 0.38311 |
BRCA | TCGA-A8-A08B-01A | TCGA-A8-A08B | MATR3|CTNNA1 | MATR3 | CTNNA1 | 5 | 5 | 1 | 1 | 9 | 12 | 12 | 0.21 | 138615747 | 137988753 | tier1 | NA | 10034 | validated | 0.37386 |
BRCA | TCGA-D8-A27W-01A | TCGA-D8-A27W | MATR3|PCDHA2 | MATR3 | PCDHA2 | 5 | 5 | 1 | 1 | 9 | 17 | 16 | 1 | 138629494 | 140358534 | tier1 | 5UTR-CDS | 10036 | NA | 0.36972 |
BRCA | TCGA-C8-A12Y-01A | TCGA-C8-A12Y | MBNL1|NAALADL2 | MBNL1 | NAALADL2 | 3 | 3 | 1 | 1 | 3 | 5 | 5 | 1.1 | 152018156 | 174455431 | tier1 | NA | 10051 | NA | 0.33849 |
BRCA | TCGA-OL-A6VO-01A | TCGA-OL-A6VO | MBOAT1|FYN | MBOAT1 | FYN | 6 | 6 | -1 | -1 | 31 | 48 | 37 | 0.42 | 20212367 | 111983150 | tier1 | Out-of-frame | 10059 | NA | 0.38684 |
BRCA | TCGA-AO-A0JE-01A | TCGA-AO-A0JE | MCPH1|CSMD1 | MCPH1 | CSMD1 | 8 | 8 | 1 | -1 | 4 | 3 | 3 | 1.4 | 6312773 | 3351248 | tier1 | In-frame | 10105 | NA | 0.34362 |
BRCA | TCGA-BH-A0B1-01A | TCGA-BH-A0B1 | MDM1|ABCC1 | MDM1 | ABCC1 | 12 | 16 | -1 | 1 | 4 | 7 | 7 | 0.69 | 68707223 | 16108348 | tier1 | In-frame | 10115 | NA | 0.35306 |
BRCA | TCGA-AN-A049-01A | TCGA-AN-A049 | MECR|NAALADL2 | MECR | NAALADL2 | 1 | 3 | -1 | 1 | 7 | 1 | 1 | 0.12 | 29557243 | 175473008 | tier2 | Out-of-frame | 10146 | NA | 0.36092 |
BRCA | TCGA-BH-A0AW-01A | TCGA-BH-A0AW | MED1|ABCC3 | MED1 | ABCC3 | 17 | 17 | -1 | 1 | 309 | 241 | 226 | 0.31 | 37604051 | 48733193 | tier1 | In-frame | 10147 | NA | 0.36447 |
BRCA | TCGA-AC-A23C-01A | TCGA-AC-A23C | MED1|CAP2 | MED1 | CAP2 | 17 | 6 | -1 | 1 | 17 | 9 | 8 | 0.69 | 37595418 | 17539500 | tier1 | Out-of-frame | 10149 | NA | 0.36561 |
BRCA | TCGA-A2-A0EY-01A | TCGA-A2-A0EY | MED1|TMPRSS9 | MED1 | TMPRSS9 | 17 | 19 | -1 | 1 | 33 | 35 | 32 | 0.66 | 37607291 | 2398793 | tier1 | Out-of-frame | 10163 | non-validated | 0.36007 |
BRCA | TCGA-BH-A1FM-01A | TCGA-BH-A1FM | MED13|ABCA9 | MED13 | ABCA9 | 17 | 17 | -1 | -1 | 5 | 5 | 3 | 0.057 | 60038949 | 67025368 | tier1 | Out-of-frame | 10166 | NA | 0.36239 |
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