Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AR-A2LR-01A | TCGA-AR-A2LR | LSAMP|GAP43 | LSAMP | GAP43 | 3 | 3 | -1 | 1 | 2 | 2 | 2 | 1.4 | 117716029 | 115394860 | tier3 | Out-of-frame | 9626 | NA | 0.36925 |
| BRCA | TCGA-AN-A0XN-01A | TCGA-AN-A0XN | LTBP1|CDH23 | LTBP1 | CDH23 | 2 | 10 | 1 | 1 | 4 | 4 | 1 | 0.72 | 33447218 | 73269839 | tier3 | In-frame | 9649 | NA | 0.37387 |
| BRCA | TCGA-AO-A128-01A | TCGA-AO-A128 | LUC7L3|ABCC3 | LUC7L3 | ABCC3 | 17 | 17 | 1 | 1 | 2 | 3 | 2 | 0.031 | 48822174 | 48750332 | tier3 | In-frame | 9682 | NA | 0.34646 |
| BRCA | TCGA-E2-A10A-01A | TCGA-E2-A10A | MACF1|FAF1 | MACF1 | FAF1 | 1 | 1 | 1 | -1 | 36 | 28 | 28 | 1 | 39893286 | 51061888 | tier1 | In-frame | 9727 | NA | 0.37395 |
| BRCA | TCGA-OK-A5Q2-01A | TCGA-OK-A5Q2 | MACF1|GRIK3 | MACF1 | GRIK3 | 1 | 1 | 1 | -1 | 3 | 1 | 1 | 2.2 | 39696915 | 37307540 | tier4 | In-frame | 9729 | NA | 0.37198 |
| BRCA | TCGA-OL-A5RZ-01A | TCGA-OL-A5RZ | MACF1|INADL | MACF1 | INADL | 1 | 1 | 1 | 1 | 8 | 14 | 13 | 0.17 | 39571389 | 62613956 | tier1 | NA | 9731 | NA | 0.37724 |
| BRCA | TCGA-A7-A4SD-01A | TCGA-A7-A4SD | MACF1|PTPRU | MACF1 | PTPRU | 1 | 1 | 1 | 1 | 6 | 3 | 3 | 0.38 | 39571389 | 29581787 | tier4 | NA | 9733 | NA | 0.37634 |
| BRCA | TCGA-BH-A18H-01A | TCGA-BH-A18H | MAGI3|ATF6 | MAGI3 | ATF6 | 1 | 1 | 1 | 1 | 6 | 4 | 4 | 0.041 | 114092253 | 161829997 | tier1 | Out-of-frame | 9772 | NA | 0.37505 |
| BRCA | TCGA-BH-A0W3-01A | TCGA-BH-A0W3 | MAGI3|NOTCH2 | MAGI3 | NOTCH2 | 1 | 1 | 1 | -1 | 3 | 7 | 6 | 0.76 | 113933971 | 120529705 | tier1 | In-frame | 9774 | NA | 0.38557 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | MAGI3|RAP1A | MAGI3 | RAP1A | 1 | 1 | 1 | 1 | 2 | 5 | 5 | 0.008 | 113933971 | 112245958 | tier3 | Out-of-frame | 9775 | NA | 0.38376 |
| BRCA | TCGA-A7-A2KD-01A | TCGA-A7-A2KD | MAGI3|SPAG17 | MAGI3 | SPAG17 | 1 | 1 | 1 | -1 | 3 | 2 | 2 | 0.13 | 113933971 | 118550821 | tier1 | In-frame | 9776 | NA | 0.36131 |
| BRCA | TCGA-D8-A27H-01A | TCGA-D8-A27H | MAML2|CNTN5 | MAML2 | CNTN5 | 11 | 11 | -1 | 1 | 5 | 12 | 9 | 1.6 | 95825056 | 99715584 | tier1 | Out-of-frame | 9786 | validated | 0.36322 |
| BRCA | TCGA-OL-A5D7-01A | TCGA-OL-A5D7 | MAN1A2|CD101 | MAN1A2 | CD101 | 1 | 1 | 1 | 1 | 96 | 61 | 56 | 1.1 | 118009049 | 117576482 | tier1 | In-frame | 9804 | NA | 0.33581 |
| BRCA | TCGA-E2-A14Y-01A | TCGA-E2-A14Y | MAP2K3|NKAIN3 | MAP2K3 | NKAIN3 | 17 | 8 | 1 | 1 | 13 | 4 | 4 | 0.16 | 21188281 | 63492098 | tier1 | Out-of-frame | 9836 | NA | 0.38895 |
| BRCA | TCGA-GI-A2C8-01A | TCGA-GI-A2C8 | MAP2K4|CD79B | MAP2K4 | CD79B | 17 | 17 | 1 | -1 | 4 | 12 | 11 | 0.59 | 11958308 | 62008745 | tier1 | Out-of-frame | 9837 | NA | 0.39409 |
| BRCA | TCGA-A8-A09D-01A | TCGA-A8-A09D | MAP4|RHOA | MAP4 | RHOA | 3 | 3 | -1 | -1 | 113 | 32 | 28 | 0.18 | 48130263 | 49413024 | tier1 | 5UTR-5UTR | 9895 | NA | 0.38805 |
| BRCA | TCGA-BH-A0C3-01A | TCGA-BH-A0C3 | MAP4K2|NETO2 | MAP4K2 | NETO2 | 11 | 16 | -1 | -1 | 4 | 1 | 1 | 0.37 | 64566266 | 47143622 | tier3 | Out-of-frame | 9904 | NA | 0.38032 |
| BRCA | TCGA-GM-A3XL-01A | TCGA-GM-A3XL | MAPK1|KCNJ4 | MAPK1 | KCNJ4 | 22 | 22 | -1 | -1 | 7 | 11 | 10 | 0.019 | 22160139 | 38824176 | tier1 | CDS-5UTR | 9929 | non-validated | 0.3852 |
| BRCA | TCGA-A2-A0EY-01A | TCGA-A2-A0EY | MAPK1IP1L|ARF6 | MAPK1IP1L | ARF6 | 14 | 14 | 1 | 1 | 4 | 3 | 2 | 0.04 | 55518521 | 50359974 | tier1 | 5UTR-5UTR | 9944 | non-validated | 0.37883 |
| BRCA | TCGA-A2-A0EV-01A | TCGA-A2-A0EV | MAPK8|KIRREL2 | MAPK8 | KIRREL2 | 10 | 19 | 1 | 1 | 3 | 2 | 2 | 0.18 | 49534008 | 36355550 | tier1 | NA | 9951 | NA | 0.38836 |
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