Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AR-A0TV-01A | TCGA-AR-A0TV | LRP12|KCNB2 | LRP12 | KCNB2 | 8 | 8 | -1 | 1 | 16 | 11 | 10 | 0.15 | 105601047 | 73479877 | tier1 | CDS-5UTR | 9514 | NA | 0.36559 |
| BRCA | TCGA-AC-A6IX-01A | TCGA-AC-A6IX | LRP12|LAPTM4B | LRP12 | LAPTM4B | 8 | 8 | -1 | 1 | 40 | 25 | 24 | 0.46 | 105601047 | 98863625 | tier1 | Out-of-frame | 9515 | NA | 0.36457 |
| BRCA | TCGA-BH-A0B7-01A | TCGA-BH-A0B7 | LRP12|RIMS2 | LRP12 | RIMS2 | 8 | 8 | -1 | 1 | 4 | 4 | 3 | 1.2 | 105521167 | 105160835 | tier1 | In-frame | 9518 | NA | 0.36949 |
| BRCA | TCGA-E2-A14X-01A | TCGA-E2-A14X | LRP12|TRAPPC9 | LRP12 | TRAPPC9 | 8 | 8 | -1 | -1 | 60 | 29 | 25 | 0.66 | 105544135 | 141034176 | tier1 | Out-of-frame | 9519 | non-validated | 0.36338 |
| BRCA | TCGA-A2-A04Y-01A | TCGA-A2-A04Y | LRP12|VPS13B | LRP12 | VPS13B | 8 | 8 | -1 | 1 | 4 | 11 | 11 | 0.17 | 105601047 | 100025988 | tier1 | CDS-5UTR | 9520 | NA | 0.36748 |
| BRCA | TCGA-BH-A0GY-01A | TCGA-BH-A0GY | LRP3|THAP8 | LRP3 | THAP8 | 19 | 19 | 1 | -1 | 15 | 9 | 9 | 0.83 | 33693892 | 36531038 | tier1 | In-frame | 9524 | NA | 0.36594 |
| BRCA | TCGA-PE-A5DC-01A | TCGA-PE-A5DC | LRP5|ALKBH5 | LRP5 | ALKBH5 | 11 | 17 | 1 | 1 | 6 | 8 | 7 | 0.16 | 68080273 | 18098269 | tier1 | Out-of-frame | 9527 | NA | 0.3699 |
| BRCA | TCGA-BH-A0W3-01A | TCGA-BH-A0W3 | LRP5|CASQ2 | LRP5 | CASQ2 | 11 | 1 | 1 | -1 | 11 | 4 | 4 | 0.14 | 68125315 | 116287533 | tier1 | Out-of-frame | 9529 | NA | 0.37292 |
| BRCA | TCGA-A8-A09I-01A | TCGA-A8-A09I | LRP5|DLG2 | LRP5 | DLG2 | 11 | 11 | 1 | -1 | 4 | 9 | 9 | 0.42 | 68157520 | 83676511 | tier1 | In-frame | 9532 | non-validated | 0.38419 |
| BRCA | TCGA-A1-A0SQ-01A | TCGA-A1-A0SQ | LRP5|MOGAT2 | LRP5 | MOGAT2 | 11 | 11 | 1 | 1 | 91 | 27 | 24 | 0.17 | 68193655 | 75431037 | tier2 | In-frame | 9533 | NA | 0.36914 |
| BRCA | TCGA-BH-A18L-01A | TCGA-BH-A18L | LRP5|NOX4 | LRP5 | NOX4 | 11 | 11 | 1 | -1 | 4 | 3 | 3 | 0.81 | 68207384 | 89088211 | tier1 | Out-of-frame | 9534 | NA | 0.37226 |
| BRCA | TCGA-E2-A150-01A | TCGA-E2-A150 | LRP5|ZNF507 | LRP5 | ZNF507 | 11 | 19 | 1 | 1 | 11 | 19 | 19 | 0.12 | 68197168 | 32873373 | tier1 | Out-of-frame | 9540 | NA | 0.3756 |
| BRCA | TCGA-A7-A0CG-01A | TCGA-A7-A0CG | LRP6|GPR19 | LRP6 | GPR19 | 12 | 12 | -1 | -1 | 5 | 4 | 2 | 0.62 | 12397196 | 12815404 | tier1 | CDS-5UTR | 9544 | NA | 0.37053 |
| BRCA | TCGA-A8-A08F-01A | TCGA-A8-A08F | LRP8|RAD51C | LRP8 | RAD51C | 1 | 17 | -1 | 1 | 33 | 17 | 17 | 0.21 | 53720789 | 56772292 | tier1 | In-frame | 9551 | NA | 0.37676 |
| BRCA | TCGA-AC-A6IW-01A | TCGA-AC-A6IW | LRP8|TMEM217 | LRP8 | TMEM217 | 1 | 6 | -1 | -1 | 7 | 14 | 13 | 0.24 | 53716362 | 37186817 | tier1 | CDS-5UTR | 9552 | NA | 0.37151 |
| BRCA | TCGA-C8-A12W-01A | TCGA-C8-A12W | LRR1|KCNH5 | LRR1 | KCNH5 | 14 | 14 | 1 | -1 | 2 | 9 | 9 | 0.26 | 50065921 | 63473190 | tier2 | Out-of-frame | 9555 | NA | 0.35108 |
| BRCA | TCGA-B6-A0RE-01A | TCGA-B6-A0RE | LRRC8A|CCBL1 | LRRC8A | CCBL1 | 9 | 9 | 1 | -1 | 2 | 2 | 2 | 1.2 | 131671600 | 131607690 | tier2 | CDS-5UTR | 9600 | non-validated | 0.33858 |
| BRCA | TCGA-E2-A158-01A | TCGA-E2-A158 | LRRC8A|GON4L | LRRC8A | GON4L | 9 | 1 | 1 | -1 | 9 | 9 | 8 | 0.36 | 131648400 | 155774932 | tier2 | 5UTR-CDS | 9601 | NA | 0.34352 |
| BRCA | TCGA-A8-A09G-01A | TCGA-A8-A09G | LRRC8D|C1orf168 | LRRC8D | C1orf168 | 1 | 1 | 1 | -1 | 40 | 28 | 26 | 0.01 | 90309341 | 57233611 | tier1 | 5UTR-CDS | 9603 | NA | 0 |
| BRCA | TCGA-BH-A204-01A | TCGA-BH-A204 | LSAMP|C3orf70 | LSAMP | C3orf70 | 3 | 3 | -1 | -1 | 3 | 2 | 2 | 0.009 | 115805171 | 184801351 | tier1 | In-frame | 9623 | NA | 0 |
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