Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-D8-A142-01A | TCGA-D8-A142 | LDLRAD3|ELP4 | LDLRAD3 | ELP4 | 11 | 11 | 1 | 1 | 11 | 31 | 28 | 0.92 | 35965694 | 31804941 | tier1 | Out-of-frame | 9277 | NA | 0.34116 |
| BRCA | TCGA-BH-A0AV-01A | TCGA-BH-A0AV | LGR6|GPR37L1 | LGR6 | GPR37L1 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 1.1 | 202163329 | 202096869 | tier2 | Out-of-frame | 9318 | non-validated | 0.34842 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | LIFR|C9 | LIFR | C9 | 5 | 5 | -1 | -1 | 9 | 13 | 12 | 0.023 | 38493708 | 39316131 | tier1 | Out-of-frame | 9328 | non-validated | 0.37484 |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | LIMA1|TRAPPC9 | LIMA1 | TRAPPC9 | 12 | 8 | -1 | -1 | 6 | 6 | 6 | 0.62 | 50642416 | 140999044 | tier1 | In-frame | 9336 | NA | 0.35332 |
| BRCA | TCGA-A8-A08F-01A | TCGA-A8-A08F | LIN7A|TRHDE | LIN7A | TRHDE | 12 | 12 | -1 | 1 | 2 | 5 | 5 | 0.35 | 81331420 | 72680461 | tier4 | Out-of-frame | 9361 | NA | 0.37113 |
| BRCA | TCGA-AR-A24Q-01A | TCGA-AR-A24Q | LMBR1|EPHA1 | LMBR1 | EPHA1 | 7 | 7 | -1 | -1 | 2 | 2 | 1 | 2.1 | 156589083 | 143098698 | tier2 | In-frame | 9382 | NA | 0.37379 |
| BRCA | TCGA-A2-A0D2-01A | TCGA-A2-A0D2 | LMBR1|PTPRN2 | LMBR1 | PTPRN2 | 7 | 7 | -1 | -1 | 100 | 67 | 64 | 0.83 | 156589083 | 157341713 | tier1 | Out-of-frame | 9385 | validated | 0.35877 |
| BRCA | TCGA-AR-A24K-01A | TCGA-AR-A24K | LMBR1|PTPRN2 | LMBR1 | PTPRN2 | 7 | 7 | -1 | -1 | 54 | 65 | 59 | 0.83 | 156516806 | 157997965 | tier1 | In-frame | 9386 | NA | 0.35877 |
| BRCA | TCGA-C8-A1HN-01A | TCGA-C8-A1HN | LMBR1|TPRG1 | LMBR1 | TPRG1 | 7 | 3 | -1 | 1 | 2 | 4 | 4 | 0.079 | 156589083 | 188956522 | tier3 | Out-of-frame | 9389 | NA | 0.34109 |
| BRCA | TCGA-C8-A1HK-01A | TCGA-C8-A1HK | LMBRD1|EYS | LMBRD1 | EYS | 6 | 6 | -1 | -1 | 2 | 1 | 1 | 0.24 | 70490386 | 65767620 | tier4 | In-frame | 9394 | NA | 0.34286 |
| BRCA | TCGA-A2-A0D2-01A | TCGA-A2-A0D2 | LNPEP|CAST | LNPEP | CAST | 5 | 5 | 1 | 1 | 20 | 30 | 28 | 0.17 | 96271878 | 96011243 | tier1 | CDS-5UTR | 9413 | validated | 0.37288 |
| BRCA | TCGA-A8-A09A-01A | TCGA-A8-A09A | LNX1|GABRB1 | LNX1 | GABRB1 | 4 | 4 | -1 | 1 | 4 | 5 | 5 | 0.082 | 54439790 | 47322144 | tier1 | In-frame | 9417 | NA | 0.37599 |
| BRCA | TCGA-A2-A0D0-01A | TCGA-A2-A0D0 | LPAR3|ST6GALNAC3 | LPAR3 | ST6GALNAC3 | 1 | 1 | -1 | 1 | 5 | 6 | 4 | 0.019 | 85331068 | 77093137 | tier1 | Out-of-frame | 9436 | validated | 0.35677 |
| BRCA | TCGA-E2-A10F-01A | TCGA-E2-A10F | LPHN3|PPP3CA | LPHN3 | PPP3CA | 4 | 4 | 1 | -1 | 3 | 5 | 3 | 0.32 | 62679607 | 102030235 | tier1 | In-frame | 9449 | NA | 0.37209 |
| BRCA | TCGA-A8-A06U-01A | TCGA-A8-A06U | LPP|FAM108C1 | LPP | FAM108C1 | 3 | 15 | 1 | 1 | 12 | 9 | 8 | 0.13 | 187943315 | 81046492 | tier1 | 5UTR-CDS | 9460 | NA | 0.36643 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | LPP|SPATA16 | LPP | SPATA16 | 3 | 3 | 1 | -1 | 2 | 12 | 8 | 0.39 | 188584166 | 172737365 | tier2 | In-frame | 9466 | NA | 0.36719 |
| BRCA | TCGA-E9-A1RH-01A | TCGA-E9-A1RH | LPP|TP63 | LPP | TP63 | 3 | 3 | 1 | 1 | 14 | 19 | 17 | 0.26 | 188059507 | 189526061 | tier1 | 5UTR-CDS | 9468 | NA | 0.37541 |
| BRCA | TCGA-BH-A18T-01A | TCGA-BH-A18T | LRBA|GRIK3 | LRBA | GRIK3 | 4 | 1 | -1 | -1 | 3 | 2 | 2 | 3.4 | 151518235 | 37271927 | tier1 | Out-of-frame | 9477 | NA | 0.36542 |
| BRCA | TCGA-AR-A1AH-01A | TCGA-AR-A1AH | LRIG3|PIP4K2C | LRIG3 | PIP4K2C | 12 | 12 | -1 | 1 | 82 | 22 | 20 | 1.5 | 59307763 | 57995709 | tier1 | CDS-3UTR | 9500 | NA | 0.3538 |
| BRCA | TCGA-A8-A07F-01A | TCGA-A8-A07F | LRP11|ULBP2 | LRP11 | ULBP2 | 6 | 6 | -1 | 1 | 10 | 3 | 3 | 100 | 150147400 | 150269859 | tier1 | CDS-3UTR | 9512 | NA | 0.3438 |
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