Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A0HY-01A | TCGA-BH-A0HY | KIAA0564|PTPRG | KIAA0564 | PTPRG | 13 | 3 | -1 | 1 | 2 | 1 | 1 | 0.19 | 42481722 | 61975299 | tier2 | Out-of-frame | 8797 | NA | 0.36116 |
| BRCA | TCGA-E9-A1N4-01A | TCGA-E9-A1N4 | KIAA0664|DLG5 | KIAA0664 | DLG5 | 17 | 10 | -1 | -1 | 2 | 4 | 3 | 0.11 | 2595055 | 79603464 | tier3 | In-frame | 8801 | NA | 0.37369 |
| BRCA | TCGA-C8-A12K-01A | TCGA-C8-A12K | KIAA0922|MND1 | KIAA0922 | MND1 | 4 | 4 | 1 | 1 | 7 | 4 | 4 | 0.6 | 154525582 | 154315414 | tier4 | Out-of-frame | 8811 | NA | 0.34132 |
| BRCA | TCGA-EW-A1OZ-01A | TCGA-EW-A1OZ | KIAA0930|ANK3 | KIAA0930 | ANK3 | 22 | 10 | -1 | -1 | 10 | 15 | 14 | 0.94 | 45636521 | 61898845 | tier1 | In-frame | 8813 | NA | 0.36802 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | KIAA1109|GPR125 | KIAA1109 | GPR125 | 4 | 4 | 1 | -1 | 27 | 15 | 13 | 0.061 | 123260563 | 22394313 | tier1 | Out-of-frame | 8825 | validated | 0.36393 |
| BRCA | TCGA-A1-A0SO-01A | TCGA-A1-A0SO | KIAA1211|ITSN1 | KIAA1211 | ITSN1 | 4 | 21 | 1 | 1 | 2 | 3 | 3 | 0.019 | 57045596 | 35091102 | tier3 | 5UTR-5UTR | 8830 | NA | 0.37834 |
| BRCA | TCGA-AC-A2FB-01A | TCGA-AC-A2FB | KIAA1267|LAYN | KIAA1267 | LAYN | 17 | 11 | -1 | 1 | 60 | 72 | 56 | 0.034 | 44127899 | 111414648 | tier1 | In-frame | 8845 | NA | 0.35168 |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | KIAA1429|CAMK2A | KIAA1429 | CAMK2A | 8 | 5 | -1 | -1 | 3 | 2 | 1 | 0.36 | 95541298 | 149602276 | tier3 | Out-of-frame | 8863 | non-validated | 0.38125 |
| BRCA | TCGA-A2-A0ES-01A | TCGA-A2-A0ES | KIF13B|ODZ4 | KIF13B | ODZ4 | 8 | 11 | -1 | -1 | 31 | 16 | 16 | 0.36 | 28980108 | 78387432 | tier1 | In-frame | 8941 | NA | 0.3698 |
| BRCA | TCGA-BH-A1EV-01A | TCGA-BH-A1EV | KIRREL|RBP7 | KIRREL | RBP7 | 1 | 1 | 1 | 1 | 6 | 12 | 12 | 2.5 | 157963518 | 10075840 | tier1 | Out-of-frame | 9025 | NA | 0.37027 |
| BRCA | TCGA-BH-A0HL-01A | TCGA-BH-A0HL | KLHL32|ROBO1 | KLHL32 | ROBO1 | 6 | 3 | 1 | -1 | 2 | 2 | 2 | 1 | 97424053 | 78988077 | tier3 | Out-of-frame | 9071 | NA | 0.37451 |
| BRCA | TCGA-D8-A27G-01A | TCGA-D8-A27G | KPNB1|SKAP1 | KPNB1 | SKAP1 | 17 | 17 | 1 | -1 | 43 | 16 | 10 | 0.067 | 45748198 | 46239931 | tier1 | Out-of-frame | 9110 | NA | 0.38128 |
| BRCA | TCGA-A2-A0D0-01A | TCGA-A2-A0D0 | KSR2|P2RX4 | KSR2 | P2RX4 | 12 | 12 | -1 | 1 | 2 | 3 | 3 | 1.2 | 118198816 | 121670217 | tier2 | In-frame | 9167 | validated | 0.37658 |
| BRCA | TCGA-A2-A0EY-01A | TCGA-A2-A0EY | L2HGDH|LMBRD1 | L2HGDH | LMBRD1 | 14 | 6 | -1 | -1 | 30 | 9 | 9 | 0.27 | 50760833 | 70386433 | tier1 | Out-of-frame | 9172 | non-validated | 0.33555 |
| BRCA | TCGA-A1-A0SJ-01A | TCGA-A1-A0SJ | LAMA5|C12orf28 | LAMA5 | C12orf28 | 20 | 12 | -1 | 1 | 36 | 28 | 26 | 0.36 | 60937456 | 70272808 | tier1 | CDS-5UTR | 9194 | NA | 0 |
| BRCA | TCGA-A2-A25F-01A | TCGA-A2-A25F | LANCL2|TFDP2 | LANCL2 | TFDP2 | 7 | 3 | 1 | -1 | 7 | 22 | 18 | 1.5 | 55469013 | 141682805 | tier4 | In-frame | 9220 | NA | 0.36504 |
| BRCA | TCGA-AC-A6IW-01A | TCGA-AC-A6IW | LAPTM4A|SDC1 | LAPTM4A | SDC1 | 2 | 2 | -1 | -1 | 136 | 160 | 141 | 0.72 | 20251171 | 20405185 | tier1 | In-frame | 9224 | NA | 0.36906 |
| BRCA | TCGA-BH-A5IZ-01A | TCGA-BH-A5IZ | LARP4|RYR3 | LARP4 | RYR3 | 12 | 15 | 1 | 1 | 8 | 11 | 11 | 3.6 | 50794811 | 34028436 | tier1 | Out-of-frame | 9237 | NA | 0.36174 |
| BRCA | TCGA-BH-A1FE-01A | TCGA-BH-A1FE | LDLR|TNPO2 | LDLR | TNPO2 | 19 | 19 | 1 | -1 | 35 | 7 | 5 | 0.98 | 11240346 | 12834179 | tier1 | CDS-5UTR | 9271 | NA | 0.3745 |
| BRCA | TCGA-E9-A22G-01A | TCGA-E9-A22G | LDLRAD3|CD44 | LDLRAD3 | CD44 | 11 | 11 | 1 | 1 | 9 | 36 | 34 | 0.62 | 35965694 | 35198122 | tier1 | In-frame | 9275 | NA | 0.37365 |
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