Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A202-01A | TCGA-BH-A202 | KAT6A|MSR1 | KAT6A | MSR1 | 8 | 8 | -1 | -1 | 55 | 47 | 42 | 0.34 | 41905896 | 16035501 | tier1 | CDS-5UTR | 8532 | NA | 0.35117 |
| BRCA | TCGA-EW-A6S9-01A | TCGA-EW-A6S9 | KCNC3|ASPDH | KCNC3 | ASPDH | 19 | 19 | -1 | -1 | 2 | 1 | 1 | 0.057 | 50831470 | 51015547 | tier2 | Out-of-frame | 8570 | NA | 0.3343 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | KCNC4|GSTM4 | KCNC4 | GSTM4 | 1 | 1 | 1 | 1 | 10 | 9 | 9 | 1.8 | 110768800 | 110207633 | tier1 | Out-of-frame | 8572 | NA | 0.36168 |
| BRCA | TCGA-A8-A06U-01A | TCGA-A8-A06U | KCNE2|HTN3 | KCNE2 | HTN3 | 21 | 4 | 1 | 1 | 2 | 2 | 2 | 100 | 35736450 | 70898884 | tier2 | 5UTR-CDS | 8573 | NA | 0.35103 |
| BRCA | TCGA-EW-A6SA-01A | TCGA-EW-A6SA | KCNH1|LPGAT1 | KCNH1 | LPGAT1 | 1 | 1 | -1 | -1 | 11 | 5 | 5 | 0.86 | 211192206 | 212002665 | tier1 | CDS-5UTR | 8574 | NA | 0.35544 |
| BRCA | TCGA-BH-A1FM-01A | TCGA-BH-A1FM | KCNJ3|GALNT13 | KCNJ3 | GALNT13 | 2 | 2 | 1 | 1 | 12 | 20 | 19 | 0.28 | 155566331 | 155252503 | tier1 | In-frame | 8576 | NA | 0.34714 |
| BRCA | TCGA-C8-A135-01A | TCGA-C8-A135 | KCNMA1|DLG5 | KCNMA1 | DLG5 | 10 | 10 | -1 | -1 | 2 | 5 | 5 | 0.52 | 79163620 | 79552301 | tier3 | Out-of-frame | 8583 | NA | 0.37922 |
| BRCA | TCGA-EW-A1OV-01A | TCGA-EW-A1OV | KCNMA1|ECD | KCNMA1 | ECD | 10 | 10 | -1 | -1 | 10 | 4 | 2 | 0.22 | 78943179 | 74923708 | tier1 | CDS-5UTR | 8585 | NA | 0.36896 |
| BRCA | TCGA-A2-A25D-01A | TCGA-A2-A25D | KCNMA1|MSMB | KCNMA1 | MSMB | 10 | 10 | -1 | 1 | 3 | 4 | 4 | 1.6 | 78869931 | 51555731 | tier1 | In-frame | 8588 | NA | 0.36414 |
| BRCA | TCGA-E2-A106-01A | TCGA-E2-A106 | KCNMA1|RFX2 | KCNMA1 | RFX2 | 10 | 19 | -1 | -1 | 4 | 2 | 2 | 0.002 | 79397023 | 6047515 | tier1 | CDS-5UTR | 8589 | NA | 0.37118 |
| BRCA | TCGA-A2-A0CW-01A | TCGA-A2-A0CW | KCNN3|DCST2 | KCNN3 | DCST2 | 1 | 1 | -1 | -1 | 8 | 10 | 9 | 0.88 | 154794565 | 154999191 | tier1 | Out-of-frame | 8596 | NA | 0.34103 |
| BRCA | TCGA-D8-A1JG-01B | TCGA-D8-A1JG | KCNQ1|TSPAN32 | KCNQ1 | TSPAN32 | 11 | 11 | 1 | 1 | 16 | 8 | 6 | 0.012 | 2549248 | 2324074 | tier1 | In-frame | 8603 | NA | 0.36029 |
| BRCA | TCGA-A2-A04P-01A | TCGA-A2-A04P | KDM4A|PTPRF | KDM4A | PTPRF | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1.2 | 44115923 | 44083116 | tier3 | 5UTR-CDS | 8663 | validated | 0.37646 |
| BRCA | TCGA-A1-A0SK-01A | TCGA-A1-A0SK | KDM5A|ANO2 | KDM5A | ANO2 | 12 | 12 | -1 | -1 | 227 | 138 | 134 | 1.4 | 427272 | 5708795 | tier1 | In-frame | 8688 | NA | 0.32878 |
| BRCA | TCGA-AO-A03N-01B | TCGA-AO-A03N | KHSRP|CD70 | KHSRP | CD70 | 19 | 19 | -1 | -1 | 3 | 3 | 3 | 0.1 | 6418494 | 6590147 | tier1 | In-frame | 8723 | non-validated | 0.37242 |
| BRCA | TCGA-A2-A25A-01A | TCGA-A2-A25A | KIAA0182|HSD17B2 | KIAA0182 | HSD17B2 | 16 | 16 | 1 | 1 | 3 | 4 | 3 | 0.38 | 85667738 | 82101775 | tier1 | In-frame | 8743 | NA | 0.36791 |
| BRCA | TCGA-AO-A03M-01B | TCGA-AO-A03M | KIAA0195|ICT1 | KIAA0195 | ICT1 | 17 | 17 | 1 | 1 | 4 | 4 | 4 | 0.59 | 73468010 | 73013173 | tier1 | In-frame | 8748 | NA | 0.33497 |
| BRCA | TCGA-JL-A3YW-01A | TCGA-JL-A3YW | KIAA0195|ICT1 | KIAA0195 | ICT1 | 17 | 17 | 1 | 1 | 5 | 50 | 46 | 0.59 | 73452832 | 73013173 | tier1 | 5UTR-CDS | 8749 | NA | 0.33497 |
| BRCA | TCGA-A8-A06O-01A | TCGA-A8-A06O | KIAA0247|RAD51B | KIAA0247 | RAD51B | 14 | 14 | 1 | 1 | 4 | 18 | 17 | 1.7 | 70078545 | 68758601 | tier1 | 5UTR-CDS | 8766 | NA | 0.33371 |
| BRCA | TCGA-D8-A1XJ-01A | TCGA-D8-A1XJ | KIAA0319L|PHC2 | KIAA0319L | PHC2 | 1 | 1 | -1 | -1 | 66 | 70 | 66 | 2.3 | 35907847 | 33790620 | tier1 | Out-of-frame | 8777 | NA | 0.3635 |
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