Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AC-A2BM-01A | TCGA-AC-A2BM | INTS4|GAB2 | INTS4 | GAB2 | 11 | 11 | -1 | -1 | 12 | 13 | 13 | 0.056 | 77690042 | 77991947 | tier1 | In-frame | 8268 | NA | 0.38577 |
| BRCA | TCGA-A8-A09A-01A | TCGA-A8-A09A | INTS8|DPY19L4 | INTS8 | DPY19L4 | 8 | 8 | 1 | 1 | 7 | 7 | 7 | 0.29 | 95835789 | 95778840 | tier1 | Out-of-frame | 8279 | NA | 0.33226 |
| BRCA | TCGA-A2-A04P-01A | TCGA-A2-A04P | IPO8|CDH13 | IPO8 | CDH13 | 12 | 16 | -1 | 1 | 33 | 20 | 3 | 0.12 | 30809618 | 83214475 | tier1 | Out-of-frame | 8302 | non-validated | 0.36568 |
| BRCA | TCGA-AO-A03L-01A | TCGA-AO-A03L | IQCB1|CACNG4 | IQCB1 | CACNG4 | 3 | 17 | -1 | 1 | 127 | 58 | 58 | 3.8 | 121553238 | 65014305 | tier1 | 5UTR-CDS | 8308 | non-validated | 0.34984 |
| BRCA | TCGA-AR-A24O-01A | TCGA-AR-A24O | IQCB1|ILDR1 | IQCB1 | ILDR1 | 3 | 3 | -1 | -1 | 3 | 1 | 1 | 3 | 121508920 | 121707255 | tier4 | Out-of-frame | 8309 | NA | 0.34695 |
| BRCA | TCGA-BH-A0C0-01A | TCGA-BH-A0C0 | IQGAP1|MESP2 | IQGAP1 | MESP2 | 15 | 15 | 1 | 1 | 8 | 6 | 6 | 0.034 | 90972898 | 90321296 | tier1 | In-frame | 8313 | NA | 0.38457 |
| BRCA | TCGA-BH-A0AV-01A | TCGA-BH-A0AV | IQGAP1|TTLL13 | IQGAP1 | TTLL13 | 15 | 15 | 1 | 1 | 2 | 7 | 4 | 0.71 | 90934105 | 90805238 | tier3 | In-frame | 8321 | non-validated | 0.38414 |
| BRCA | TCGA-E2-A9RU-01A | TCGA-E2-A9RU | ITGB1|DYM | ITGB1 | DYM | 10 | 18 | -1 | -1 | 4 | 1 | 1 | 0.38 | 33214799 | 46798673 | tier3 | In-frame | 8395 | NA | 0.38 |
| BRCA | TCGA-A8-A08O-01A | TCGA-A8-A08O | ITGB4|NARF | ITGB4 | NARF | 17 | 17 | 1 | 1 | 3 | 2 | 2 | 1.3 | 73753188 | 80426640 | tier1 | Out-of-frame | 8398 | NA | 0.37755 |
| BRCA | TCGA-C8-A26X-01A | TCGA-C8-A26X | ITGB4|SLC16A5 | ITGB4 | SLC16A5 | 17 | 17 | 1 | 1 | 9 | 9 | 8 | 0.43 | 73747192 | 73094133 | tier1 | In-frame | 8403 | NA | 0.3793 |
| BRCA | TCGA-AO-A03L-01A | TCGA-AO-A03L | ITGB5|PARP14 | ITGB5 | PARP14 | 3 | 3 | -1 | 1 | 14 | 6 | 6 | 1.2 | 124487860 | 122427037 | tier1 | Out-of-frame | 8406 | validated | 0.37057 |
| BRCA | TCGA-D8-A1XK-01A | TCGA-D8-A1XK | ITGB6|RBMS1 | ITGB6 | RBMS1 | 2 | 2 | -1 | -1 | 10 | 96 | 87 | 0.71 | 161030485 | 161159998 | tier1 | In-frame | 8413 | NA | 0.37156 |
| BRCA | TCGA-PL-A8LX-01A | TCGA-PL-A8LX | ITPA|SLC22A24 | ITPA | SLC22A24 | 20 | 11 | 1 | -1 | 3 | 3 | 2 | 2 | 3194704 | 62847469 | tier1 | In-frame | 8432 | NA | 0.34854 |
| BRCA | TCGA-A7-A4SD-01A | TCGA-A7-A4SD | ITPR2|ANO2 | ITPR2 | ANO2 | 12 | 12 | -1 | -1 | 25 | 13 | 13 | 1.4 | 26580846 | 5941769 | tier2 | In-frame | 8451 | NA | 0.36518 |
| BRCA | TCGA-EW-A1P4-01A | TCGA-EW-A1P4 | ITPR3|AL353597.1 | ITPR3 | AL353597.1 | 6 | 6 | 1 | 1 | 2 | 4 | 4 | 0.38 | 33627326 | 37502052 | tier3 | In-frame | 8457 | NA | 0.3668 |
| BRCA | TCGA-A1-A0SO-01A | TCGA-A1-A0SO | ITSN1|KIAA1211 | ITSN1 | KIAA1211 | 21 | 4 | 1 | 1 | 2 | 5 | 5 | 0.23 | 35015019 | 57045450 | tier4 | 5UTR-5UTR | 8462 | NA | 0.37834 |
| BRCA | TCGA-E2-A9RU-01A | TCGA-E2-A9RU | JARID2|BMP6 | JARID2 | BMP6 | 6 | 6 | 1 | 1 | 7 | 11 | 11 | 0.047 | 15410596 | 7879307 | tier1 | Out-of-frame | 8477 | NA | 0.37521 |
| BRCA | TCGA-A2-A4RW-01A | TCGA-A2-A4RW | KAL1|ARHGEF26 | KAL1 | ARHGEF26 | X | 3 | -1 | 1 | 9 | 3 | 3 | 1.2 | 8667739 | 153905474 | tier1 | Out-of-frame | 8511 | NA | 0.35259 |
| BRCA | TCGA-AN-A0XL-01A | TCGA-AN-A0XL | KANK1|DOCK8 | KANK1 | DOCK8 | 9 | 9 | 1 | 1 | 7 | 5 | 5 | 1.8 | 713464 | 396785 | tier1 | Out-of-frame | 8514 | NA | 0.3629 |
| BRCA | TCGA-E2-A15A-01A | TCGA-E2-A15A | KAT6A|ADAM2 | KAT6A | ADAM2 | 8 | 8 | -1 | -1 | 226 | 162 | 151 | 0.88 | 41905896 | 39627094 | tier1 | Out-of-frame | 8523 | NA | 0.35288 |
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