Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A0W3-01A | TCGA-BH-A0W3 | IGSF3|KDM2A | IGSF3 | KDM2A | 1 | 11 | -1 | 1 | 27 | 27 | 22 | 0.003 | 117208906 | 66947550 | tier2 | Out-of-frame | 8130 | NA | 0.34214 |
| BRCA | TCGA-BH-A0GY-01A | TCGA-BH-A0GY | IGSF3|MAN1A2 | IGSF3 | MAN1A2 | 1 | 1 | -1 | 1 | 10 | 4 | 4 | 0.64 | 117208906 | 117944808 | tier1 | Out-of-frame | 8131 | NA | 0.34866 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | IGSF3|TBX15 | IGSF3 | TBX15 | 1 | 1 | -1 | -1 | 9 | 3 | 3 | 0.93 | 117142563 | 119456802 | tier1 | Out-of-frame | 8134 | non-validated | 0.34808 |
| BRCA | TCGA-E2-A159-01A | TCGA-E2-A159 | IKBIP|ANKS1B | IKBIP | ANKS1B | 12 | 12 | -1 | -1 | 5 | 9 | 8 | 0.44 | 99028074 | 99175915 | tier1 | In-frame | 8137 | NA | 0.36695 |
| BRCA | TCGA-AR-A2LK-01A | TCGA-AR-A2LK | IKBKB|FADD | IKBKB | FADD | 8 | 11 | 1 | 1 | 39 | 23 | 20 | 2.5 | 42166543 | 70052239 | tier1 | Out-of-frame | 8144 | non-validated | 0.38536 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | IL12RB2|DAB1 | IL12RB2 | DAB1 | 1 | 1 | 1 | -1 | 107 | 88 | 75 | 2.9 | 67845806 | 57611102 | tier1 | In-frame | 8156 | NA | 0.37742 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | IL12RB2|PDE4B | IL12RB2 | PDE4B | 1 | 1 | 1 | 1 | 11 | 14 | 14 | 0.65 | 67796493 | 66837996 | tier1 | Out-of-frame | 8157 | NA | 0.36135 |
| BRCA | TCGA-BH-A203-01A | TCGA-BH-A203 | IL1R1|IL1R2 | IL1R1 | IL1R2 | 2 | 2 | 1 | 1 | 5 | 6 | 4 | 1 | 102782741 | 102626024 | tier1 | In-frame | 8167 | NA | 0.36387 |
| BRCA | TCGA-GM-A2DK-01A | TCGA-GM-A2DK | IL1RAPL1|MAGEB10 | IL1RAPL1 | MAGEB10 | X | X | 1 | 1 | 2 | 6 | 6 | 3.1 | 28807542 | 27835671 | tier2 | CDS-5UTR | 8176 | NA | 0.36191 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | IL1RL2|IL1R2 | IL1RL2 | IL1R2 | 2 | 2 | 1 | 1 | 4 | 1 | 1 | 0.51 | 102828634 | 102636100 | tier2 | Out-of-frame | 8178 | NA | 0.35767 |
| BRCA | TCGA-AQ-A1H3-01A | TCGA-AQ-A1H3 | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 2 | 1 | 1 | 0.019 | 14153601 | 14141522 | tier2 | Out-of-frame | 8184 | NA | 0.36098 |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | IL28RA|C1orf201 | IL28RA | C1orf201 | 1 | 1 | -1 | -1 | 6 | 1 | 1 | 0.45 | 24507221 | 24710493 | tier3 | Out-of-frame | 8191 | NA | 0 |
| BRCA | TCGA-A2-A3XW-01A | TCGA-A2-A3XW | IL4I1|KCNQ2 | IL4I1 | KCNQ2 | 19 | 20 | -1 | -1 | 76 | 133 | 119 | 0.022 | 50430951 | 62076717 | tier1 | 5UTR-CDS | 8196 | NA | 0.36908 |
| BRCA | TCGA-AN-A0AS-01A | TCGA-AN-A0AS | IMPAD1|ZCCHC24 | IMPAD1 | ZCCHC24 | 8 | 10 | -1 | -1 | 7 | 6 | 6 | 4.4 | 57905758 | 81154196 | tier1 | In-frame | 8219 | NA | 0.33957 |
| BRCA | TCGA-A8-A06R-01A | TCGA-A8-A06R | INADL|CACHD1 | INADL | CACHD1 | 1 | 1 | 1 | 1 | 4 | 17 | 16 | 5.7 | 62393501 | 65113484 | tier1 | In-frame | 8221 | NA | 0.37236 |
| BRCA | TCGA-E2-A15P-01A | TCGA-E2-A15P | INADL|GLIS1 | INADL | GLIS1 | 1 | 1 | 1 | -1 | 12 | 10 | 3 | 3 | 62483619 | 54065951 | tier1 | CDS-5UTR | 8223 | NA | 0.3776 |
| BRCA | TCGA-EW-A3U0-01A | TCGA-EW-A3U0 | INADL|ST6GALNAC5 | INADL | ST6GALNAC5 | 1 | 1 | 1 | 1 | 33 | 8 | 8 | 0.33 | 62208227 | 77528660 | tier1 | 5UTR-CDS | 8229 | validated | 0.3703 |
| BRCA | TCGA-C8-A1HI-01A | TCGA-C8-A1HI | INO80|PRKCA | INO80 | PRKCA | 15 | 17 | -1 | 1 | 2 | 1 | 1 | 0.37 | 41371899 | 64728806 | tier3 | In-frame | 8235 | NA | 0.38231 |
| BRCA | TCGA-AR-A0TT-01A | TCGA-AR-A0TT | INPP5A|DLG2 | INPP5A | DLG2 | 10 | 11 | 1 | -1 | 8 | 2 | 2 | 0.83 | 134464009 | 84245774 | tier1 | In-frame | 8244 | NA | 0.37932 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | INSIG1|DPP6 | INSIG1 | DPP6 | 7 | 7 | 1 | 1 | 2 | 19 | 11 | 0.15 | 155094556 | 154263927 | tier2 | In-frame | 8255 | NA | 0.35233 |
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