Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A0WA-01A | TCGA-BH-A0WA | HSP90AB1|SLC29A1 | HSP90AB1 | SLC29A1 | 6 | 6 | 1 | 1 | 216 | 197 | 176 | 0.82 | 44214932 | 44195000 | tier1 | 5UTR-5UTR | 7985 | non-validated | 0.36685 |
| BRCA | TCGA-AR-A0TV-01A | TCGA-AR-A0TV | HSP90AB1|TAF3 | HSP90AB1 | TAF3 | 6 | 10 | 1 | 1 | 2 | 5 | 1 | 0.13 | 44221599 | 8017036 | tier4 | NA | 7986 | NA | 0.36972 |
| BRCA | TCGA-A2-A04W-01A | TCGA-A2-A04W | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 3 | 2 | 2 | 0.3 | 135586622 | 135572292 | tier4 | Out-of-frame | 8021 | NA | 0.3803 |
| BRCA | TCGA-A8-A06X-01A | TCGA-A8-A06X | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 23 | 12 | 11 | 0.3 | 135586622 | 135572292 | tier1 | Out-of-frame | 8022 | NA | 0.3803 |
| BRCA | TCGA-E9-A1R6-01A | TCGA-E9-A1R6 | HTT|ESYT2 | HTT | ESYT2 | 4 | 7 | 1 | -1 | 11 | 6 | 5 | 0.24 | 3201666 | 158566087 | tier1 | Out-of-frame | 8033 | NA | 0.37348 |
| BRCA | TCGA-BH-A0DX-01A | TCGA-BH-A0DX | ICMT|GPR153 | ICMT | GPR153 | 1 | 1 | -1 | -1 | 10 | 7 | 6 | 0.2 | 6293534 | 6315074 | tier1 | CDS-5UTR | 8050 | NA | 0.35641 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | ICOSLG|KCNJ6 | ICOSLG | KCNJ6 | 21 | 21 | -1 | -1 | 2 | 4 | 4 | 2.2 | 45649937 | 39087434 | tier2 | In-frame | 8051 | validated | 0.3564 |
| BRCA | TCGA-A7-A2KD-01A | TCGA-A7-A2KD | IFI44L|SLC44A3 | IFI44L | SLC44A3 | 1 | 1 | 1 | 1 | 11 | 4 | 4 | 0.21 | 79086256 | 95322891 | tier1 | 5UTR-CDS | 8059 | NA | 0.33624 |
| BRCA | TCGA-B6-A0RT-01A | TCGA-B6-A0RT | IFT74|LDLRAD3 | IFT74 | LDLRAD3 | 9 | 11 | 1 | 1 | 4 | 1 | 1 | 0.024 | 26962085 | 36248635 | tier3 | Out-of-frame | 8076 | non-validated | 0.33652 |
| BRCA | TCGA-GM-A2DK-01A | TCGA-GM-A2DK | IGF1R|ADPGK | IGF1R | ADPGK | 15 | 15 | 1 | -1 | 9 | 11 | 7 | 1.1 | 99251336 | 73064186 | tier1 | Out-of-frame | 8087 | NA | 0.38722 |
| BRCA | TCGA-E9-A1NF-01A | TCGA-E9-A1NF | IGF1R|ARID1B | IGF1R | ARID1B | 15 | 6 | 1 | 1 | 10 | 7 | 5 | 0.082 | 99251336 | 157469758 | tier1 | In-frame | 8088 | NA | 0.39315 |
| BRCA | TCGA-C8-A1HI-01A | TCGA-C8-A1HI | IGF1R|C15orf41 | IGF1R | C15orf41 | 15 | 15 | 1 | 1 | 4 | 6 | 5 | 0.025 | 99251336 | 36936479 | tier1 | CDS-5UTR | 8089 | NA | 0 |
| BRCA | TCGA-A8-A09E-01A | TCGA-A8-A09E | IGF1R|PRPS1 | IGF1R | PRPS1 | 15 | X | 1 | 1 | 4 | 3 | 3 | 0.87 | 99486281 | 106882525 | tier1 | In-frame | 8091 | NA | 0.38756 |
| BRCA | TCGA-BH-A1FG-01A | TCGA-BH-A1FG | IGF1R|RAB27A | IGF1R | RAB27A | 15 | 15 | 1 | -1 | 2 | 2 | 1 | 1.5 | 99251336 | 55562482 | tier3 | CDS-5UTR | 8092 | NA | 0.39045 |
| BRCA | TCGA-C8-A1HI-01A | TCGA-C8-A1HI | IGF1R|TRIP4 | IGF1R | TRIP4 | 15 | 15 | 1 | 1 | 17 | 16 | 2 | 0.25 | 99486281 | 64737205 | tier1 | Out-of-frame | 8093 | NA | 0.38852 |
| BRCA | TCGA-A1-A0SF-01A | TCGA-A1-A0SF | IGF1R|WDR93 | IGF1R | WDR93 | 15 | 15 | 1 | 1 | 7 | 5 | 4 | 0.083 | 99251336 | 90244938 | tier2 | CDS-5UTR | 8094 | NA | 0.38735 |
| BRCA | TCGA-EW-A1PB-01A | TCGA-EW-A1PB | IGF2BP2|NCEH1 | IGF2BP2 | NCEH1 | 3 | 3 | -1 | -1 | 2 | 6 | 6 | 0.62 | 185540941 | 172365904 | tier2 | Out-of-frame | 8107 | non-validated | 0.35027 |
| BRCA | TCGA-BH-A0BL-01A | TCGA-BH-A0BL | IGF2R|ACVR2A | IGF2R | ACVR2A | 6 | 2 | 1 | 1 | 3 | 16 | 16 | 1.9 | 160390427 | 148672760 | tier1 | Out-of-frame | 8110 | NA | 0.38092 |
| BRCA | TCGA-E9-A248-01A | TCGA-E9-A248 | IGF2R|PREP | IGF2R | PREP | 6 | 6 | 1 | -1 | 9 | 3 | 3 | 0.94 | 160461756 | 105845802 | tier1 | Out-of-frame | 8112 | NA | 0.36081 |
| BRCA | TCGA-A8-A079-01A | TCGA-A8-A079 | IGFBP5|CXCR5 | IGFBP5 | CXCR5 | 2 | 11 | -1 | 1 | 2 | 1 | 1 | 0.28 | 217536828 | 118754475 | tier3 | 3UTR-5UTR | 8120 | NA | 0.36394 |
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