Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A0W7-01A | TCGA-BH-A0W7 | GSK3B|GPR156 | GSK3B | GPR156 | 3 | 3 | -1 | -1 | 3 | 4 | 4 | 4.3 | 119562102 | 119963325 | tier1 | CDS-5UTR | 7486 | NA | 0.38152 |
| BRCA | TCGA-A2-A04Y-01A | TCGA-A2-A04Y | GSK3B|LSAMP | GSK3B | LSAMP | 3 | 3 | -1 | -1 | 2 | 2 | 2 | 0.14 | 119624602 | 116163802 | tier2 | Out-of-frame | 7487 | NA | 0.3817 |
| BRCA | TCGA-BH-A203-01A | TCGA-BH-A203 | HDAC2|TRDN | HDAC2 | TRDN | 6 | 6 | -1 | -1 | 19 | 27 | 24 | 0.039 | 114292021 | 123545276 | tier1 | In-frame | 7618 | NA | 0.3699 |
| BRCA | TCGA-B6-A0RM-01A | TCGA-B6-A0RM | HEATR3|CHRNB3 | HEATR3 | CHRNB3 | 16 | 8 | 1 | 1 | 3 | 3 | 3 | 0.082 | 50100450 | 42585737 | tier1 | Out-of-frame | 7660 | NA | 0.34594 |
| BRCA | TCGA-A8-A09Q-01A | TCGA-A8-A09Q | HEATR6|FGF10 | HEATR6 | FGF10 | 17 | 5 | -1 | -1 | 4 | 6 | 6 | 0.025 | 58132876 | 44310632 | tier1 | Out-of-frame | 7664 | NA | 0.36114 |
| BRCA | TCGA-A8-A07C-01A | TCGA-A8-A07C | HEG1|SLC12A8 | HEG1 | SLC12A8 | 3 | 3 | -1 | -1 | 6 | 4 | 4 | 0.008 | 124696703 | 124811042 | tier1 | Out-of-frame | 7686 | NA | 0.34984 |
| BRCA | TCGA-OL-A5RZ-01A | TCGA-OL-A5RZ | HELZ|TTYH2 | HELZ | TTYH2 | 17 | 17 | -1 | 1 | 6 | 4 | 4 | 0.52 | 65174775 | 72248373 | tier1 | Out-of-frame | 7698 | NA | 0.35377 |
| BRCA | TCGA-AN-A0FT-01A | TCGA-AN-A0FT | HHAT|CD34 | HHAT | CD34 | 1 | 1 | 1 | -1 | 3 | 2 | 2 | 0.37 | 210637999 | 208061268 | tier1 | Out-of-frame | 7739 | NA | 0.36128 |
| BRCA | TCGA-E2-A1LK-01A | TCGA-E2-A1LK | HHIPL2|TLR5 | HHIPL2 | TLR5 | 1 | 1 | -1 | -1 | 6 | 1 | 1 | 0.37 | 222700311 | 223310605 | tier3 | CDS-5UTR | 7746 | validated | 0.36387 |
| BRCA | TCGA-BH-A0DD-01A | TCGA-BH-A0DD | HIPK3|TOLLIP | HIPK3 | TOLLIP | 11 | 11 | 1 | -1 | 7 | 3 | 3 | 0.97 | 33279435 | 1317024 | tier1 | 5UTR-CDS | 7781 | NA | 0.38434 |
| BRCA | TCGA-A8-A09N-01A | TCGA-A8-A09N | HIST1H2AC|SLC17A4 | HIST1H2AC | SLC17A4 | 6 | 6 | 1 | 1 | 26 | 22 | 17 | 0.059 | 26124977 | 25778154 | tier1 | 3UTR-CDS | 7788 | NA | 0.34792 |
| BRCA | TCGA-BH-A1FE-06A | TCGA-BH-A1FE | HLA-B|SNW1 | HLA-B | SNW1 | 6 | 14 | -1 | -1 | 2 | 9 | 6 | 0.41 | 31321649 | 78189203 | tier4 | 3UTR-CDS | 7824 | NA | 0.37595 |
| BRCA | TCGA-S3-AA0Z-01A | TCGA-S3-AA0Z | HLA-B|UBR5 | HLA-B | UBR5 | 6 | 8 | -1 | -1 | 2 | 1 | 1 | 6.9 | 31321759 | 103354894 | tier3 | 3UTR-CDS | 7825 | NA | 0.38496 |
| BRCA | TCGA-BH-A0B6-01A | TCGA-BH-A0B6 | HLA-C|CFB | HLA-C | CFB | 6 | 6 | -1 | 1 | 4 | 2 | 2 | 0.064 | 31236528 | 31913427 | tier1 | NA | 7826 | NA | 0.36917 |
| BRCA | TCGA-E2-A158-01A | TCGA-E2-A158 | HLCS|CD53 | HLCS | CD53 | 21 | 1 | -1 | 1 | 2 | 2 | 2 | 0.34 | 38308749 | 111434014 | tier2 | CDS-5UTR | 7838 | NA | 0.3584 |
| BRCA | TCGA-AR-A256-01A | TCGA-AR-A256 | HMCN1|RNF2 | HMCN1 | RNF2 | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 0.055 | 185704179 | 185060711 | tier2 | Out-of-frame | 7850 | validated | 0.37209 |
| BRCA | TCGA-B6-A0RT-01A | TCGA-B6-A0RT | HPN|PPP2R5C | HPN | PPP2R5C | 19 | 14 | 1 | 1 | 12 | 8 | 7 | 1.3 | 35533426 | 102302506 | tier1 | Out-of-frame | 7950 | non-validated | 0.37072 |
| BRCA | TCGA-AN-A0FZ-01A | TCGA-AN-A0FZ | HS2ST1|GBP6 | HS2ST1 | GBP6 | 1 | 1 | 1 | 1 | 13 | 9 | 5 | 0.72 | 87380843 | 89834088 | tier1 | CDS-5UTR | 7960 | NA | 0.33858 |
| BRCA | TCGA-A2-A0YE-01A | TCGA-A2-A0YE | HS2ST1|PRDX1 | HS2ST1 | PRDX1 | 1 | 1 | 1 | -1 | 41 | 47 | 46 | 1 | 87380843 | 45984726 | tier1 | CDS-5UTR | 7962 | NA | 0.356 |
| BRCA | TCGA-S3-AA10-01A | TCGA-S3-AA10 | HS6ST2|ODZ1 | HS6ST2 | ODZ1 | X | X | -1 | -1 | 2 | 2 | 1 | 0.048 | 132090836 | 123663833 | tier3 | In-frame | 7967 | NA | 0.35247 |
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