Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AR-A2LR-01A | TCGA-AR-A2LR | GNPDA2|GRID2 | GNPDA2 | GRID2 | 4 | 4 | -1 | 1 | 7 | 6 | 2 | 0.29 | 44728491 | 94316758 | tier1 | 5UTR-CDS | 7251 | NA | 0.3627 |
| BRCA | TCGA-GM-A2DF-01A | TCGA-GM-A2DF | GOLGA4|HSPA8 | GOLGA4 | HSPA8 | 3 | 11 | 1 | -1 | 10 | 11 | 9 | 0.68 | 37292975 | 122930976 | tier1 | In-frame | 7263 | non-validated | 0.37821 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | GPC4|GPC3 | GPC4 | GPC3 | X | X | -1 | -1 | 31 | 32 | 31 | 0.003 | 132548834 | 132670321 | tier1 | In-frame | 7327 | NA | 0.36085 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | GPNMB|NUPL2 | GPNMB | NUPL2 | 7 | 7 | 1 | 1 | 55 | 42 | 39 | 2.2 | 23293931 | 23224689 | tier1 | In-frame | 7348 | NA | 0.35336 |
| BRCA | TCGA-AN-A0AL-01A | TCGA-AN-A0AL | GPR107|VPS13A | GPR107 | VPS13A | 9 | 9 | 1 | 1 | 5 | 6 | 5 | 0.33 | 132854660 | 79946926 | tier1 | Out-of-frame | 7350 | NA | 0.34105 |
| BRCA | TCGA-E9-A1RE-01A | TCGA-E9-A1RE | GPR126|CLSTN2 | GPR126 | CLSTN2 | 6 | 3 | 1 | 1 | 14 | 4 | 3 | 0.1 | 142630781 | 139894793 | tier1 | Out-of-frame | 7358 | NA | 0.35229 |
| BRCA | TCGA-A2-A0EY-01A | TCGA-A2-A0EY | GPR137C|FERMT2 | GPR137C | FERMT2 | 14 | 14 | 1 | -1 | 12 | 10 | 10 | 1.6 | 53020309 | 53331571 | tier1 | Out-of-frame | 7362 | non-validated | 0.34476 |
| BRCA | TCGA-E9-A229-01A | TCGA-E9-A229 | GPR157|GON4L | GPR157 | GON4L | 1 | 1 | -1 | -1 | 4 | 2 | 2 | 1.5 | 9188704 | 155755165 | tier1 | Out-of-frame | 7366 | NA | 0.35331 |
| BRCA | TCGA-C8-A1HO-01A | TCGA-C8-A1HO | GPR158|MYO16 | GPR158 | MYO16 | 10 | 13 | 1 | 1 | 65 | 103 | 94 | 0.14 | 25465251 | 109644724 | tier1 | In-frame | 7368 | NA | 0.36565 |
| BRCA | TCGA-AO-A03V-01A | TCGA-AO-A03V | GPR35|MELK | GPR35 | MELK | 2 | 9 | 1 | 1 | 2 | 1 | 1 | 0.19 | 241558448 | 36642994 | tier2 | 5UTR-CDS | 7376 | NA | 0.37921 |
| BRCA | TCGA-AO-A0JA-01A | TCGA-AO-A0JA | GPR98|ATR | GPR98 | ATR | 5 | 3 | 1 | -1 | 2 | 5 | 5 | 0.47 | 89924649 | 142286996 | tier2 | Out-of-frame | 7379 | NA | 0.37469 |
| BRCA | TCGA-B6-A0I8-01A | TCGA-B6-A0I8 | GPR98|POLR3G | GPR98 | POLR3G | 5 | 5 | 1 | 1 | 4 | 2 | 2 | 0.19 | 89938858 | 89797723 | tier4 | Out-of-frame | 7381 | NA | 0.34579 |
| BRCA | TCGA-S3-AA0Z-01A | TCGA-S3-AA0Z | GPRC5B|C16orf96 | GPRC5B | C16orf96 | 16 | 16 | -1 | 1 | 17 | 7 | 7 | 0.56 | 19873159 | 4621562 | tier1 | In-frame | 7383 | NA | 0 |
| BRCA | TCGA-E9-A22G-01A | TCGA-E9-A22G | GRB10|SLC2A13 | GRB10 | SLC2A13 | 7 | 12 | -1 | -1 | 6 | 7 | 6 | 0.39 | 50771518 | 40154054 | tier1 | In-frame | 7407 | NA | 0.37769 |
| BRCA | TCGA-BH-A202-01A | TCGA-BH-A202 | GRB7|PGAP3 | GRB7 | PGAP3 | 17 | 17 | 1 | -1 | 158 | 146 | 126 | 0.21 | 37899307 | 37842272 | tier1 | In-frame | 7419 | NA | 0.37831 |
| BRCA | TCGA-AN-A0AJ-01A | TCGA-AN-A0AJ | GRHL2|TSPAN14 | GRHL2 | TSPAN14 | 8 | 10 | 1 | 1 | 7 | 6 | 5 | 0.3 | 102505017 | 82248973 | tier1 | CDS-5UTR | 7438 | NA | 0.34212 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | GRID1|PGPEP1L | GRID1 | PGPEP1L | 10 | 15 | -1 | -1 | 17 | 7 | 7 | 1.1 | 87898576 | 99514387 | tier1 | In-frame | 7446 | NA | 0.34944 |
| BRCA | TCGA-OL-A5DA-01A | TCGA-OL-A5DA | GRIK2|CDKAL1 | GRIK2 | CDKAL1 | 6 | 6 | 1 | 1 | 5 | 6 | 6 | 0.57 | 101847268 | 21065279 | tier1 | Out-of-frame | 7447 | NA | 0.36309 |
| BRCA | TCGA-EW-A1P1-01A | TCGA-EW-A1P1 | GRIK4|TMPRSS4 | GRIK4 | TMPRSS4 | 11 | 11 | 1 | 1 | 2 | 1 | 1 | 1 | 120776202 | 117965537 | tier3 | In-frame | 7453 | NA | 0.36647 |
| BRCA | TCGA-D8-A1XK-01A | TCGA-D8-A1XK | GRINL1A|LPHN1 | GRINL1A | LPHN1 | 15 | 19 | 1 | -1 | 8 | 5 | 4 | 1.2 | 57896553 | 14263249 | tier1 | 5UTR-CDS | 7457 | NA | 0.36796 |
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