Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A0W3-01A | TCGA-BH-A0W3 | FZD4|LAMTOR1 | FZD4 | LAMTOR1 | 11 | 11 | -1 | -1 | 24 | 11 | 10 | 0.35 | 86665843 | 71810302 | tier2 | In-frame | 6858 | NA | 0.35606 |
| BRCA | TCGA-AC-A2BM-01A | TCGA-AC-A2BM | G3BP1|GLRA1 | G3BP1 | GLRA1 | 5 | 5 | 1 | -1 | 3 | 1 | 1 | 2.3 | 151151597 | 151208628 | tier3 | 5UTR-CDS | 6872 | NA | 0.37675 |
| BRCA | TCGA-3C-AAAU-01A | TCGA-3C-AAAU | GAB2|CHKA | GAB2 | CHKA | 11 | 11 | -1 | -1 | 77 | 58 | 56 | 0.045 | 78075062 | 67821514 | tier1 | NA | 6881 | NA | 0.38649 |
| BRCA | TCGA-A1-A0SM-01A | TCGA-A1-A0SM | GAB2|MYO7A | GAB2 | MYO7A | 11 | 11 | -1 | 1 | 2 | 4 | 4 | 0.13 | 78128692 | 76866953 | tier2 | In-frame | 6884 | non-validated | 0.39081 |
| BRCA | TCGA-BH-A0HY-01A | TCGA-BH-A0HY | GAB2|ODZ4 | GAB2 | ODZ4 | 11 | 11 | -1 | -1 | 31 | 51 | 47 | 0.25 | 78128692 | 78781054 | tier1 | CDS-5UTR | 6886 | NA | 0.38609 |
| BRCA | TCGA-A1-A0SM-01A | TCGA-A1-A0SM | GAB2|PLXDC1 | GAB2 | PLXDC1 | 11 | 17 | -1 | -1 | 2 | 1 | 1 | 0.39 | 78128692 | 37296085 | tier2 | Out-of-frame | 6887 | non-validated | 0.38681 |
| BRCA | TCGA-A2-A0CL-01A | TCGA-A2-A0CL | GAB2|THRSP | GAB2 | THRSP | 11 | 11 | -1 | 1 | 6 | 6 | 2 | 0.88 | 77991647 | 77778705 | tier1 | CDS-3UTR | 6890 | NA | 0.38601 |
| BRCA | TCGA-E9-A22G-01A | TCGA-E9-A22G | GABRG3|OCA2 | GABRG3 | OCA2 | 15 | 15 | 1 | -1 | 3 | 4 | 4 | 0.79 | 27271968 | 28211968 | tier1 | In-frame | 6904 | NA | 0.34219 |
| BRCA | TCGA-A8-A07R-01A | TCGA-A8-A07R | GAK|MAGI1 | GAK | MAGI1 | 4 | 3 | -1 | -1 | 8 | 3 | 2 | 0.018 | 905461 | 65607763 | tier1 | In-frame | 6906 | NA | 0.38392 |
| BRCA | TCGA-A7-A4SD-01A | TCGA-A7-A4SD | GALNT10|C5orf4 | GALNT10 | C5orf4 | 5 | 5 | 1 | -1 | 2 | 4 | 1 | 0.69 | 153570585 | 154217738 | tier3 | In-frame | 6912 | NA | 0 |
| BRCA | TCGA-AC-A6IW-01A | TCGA-AC-A6IW | GALNT10|IQCA1 | GALNT10 | IQCA1 | 5 | 2 | 1 | -1 | 2 | 6 | 5 | 0.7 | 153677639 | 237289279 | tier2 | Out-of-frame | 6913 | NA | 0.35479 |
| BRCA | TCGA-AO-A128-01A | TCGA-AO-A128 | GCFC1|ABI3BP | GCFC1 | ABI3BP | 21 | 3 | -1 | -1 | 10 | 2 | 2 | 0.023 | 34133370 | 100508360 | tier1 | Out-of-frame | 7008 | NA | 0.3464 |
| BRCA | TCGA-A2-A0YE-01A | TCGA-A2-A0YE | GDAP2|ADORA3 | GDAP2 | ADORA3 | 1 | 1 | -1 | -1 | 2 | 2 | 2 | 0.68 | 118420631 | 112043178 | tier4 | Out-of-frame | 7018 | NA | 0.35749 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | GFRA1|DGKB | GFRA1 | DGKB | 10 | 7 | -1 | -1 | 25 | 19 | 18 | 0.68 | 118029015 | 14733819 | tier1 | Out-of-frame | 7044 | NA | 0.36086 |
| BRCA | TCGA-AR-A256-01A | TCGA-AR-A256 | GIGYF2|CHRND | GIGYF2 | CHRND | 2 | 2 | 1 | 1 | 8 | 5 | 5 | 0.59 | 233613792 | 233398641 | tier2 | In-frame | 7057 | validated | 0.36371 |
| BRCA | TCGA-BH-A1F8-01A | TCGA-BH-A1F8 | GLG1|COG4 | GLG1 | COG4 | 16 | 16 | -1 | -1 | 38 | 27 | 22 | 0.94 | 74640555 | 70553634 | tier1 | In-frame | 7096 | NA | 0.35407 |
| BRCA | TCGA-AR-A24Q-01A | TCGA-AR-A24Q | GNAI3|CASQ2 | GNAI3 | CASQ2 | 1 | 1 | 1 | -1 | 11 | 6 | 6 | 0.3 | 110091460 | 116287533 | tier1 | Out-of-frame | 7172 | NA | 0.37347 |
| BRCA | TCGA-AN-A0AL-01A | TCGA-AN-A0AL | GNAI3|KIAA1324 | GNAI3 | KIAA1324 | 1 | 1 | 1 | 1 | 2 | 6 | 6 | 0.39 | 110116659 | 109707121 | tier3 | Out-of-frame | 7175 | NA | 0.37231 |
| BRCA | TCGA-E2-A14P-01A | TCGA-E2-A14P | GNAI3|SARS | GNAI3 | SARS | 1 | 1 | 1 | 1 | 198 | 165 | 151 | 2.6 | 110091460 | 109766600 | tier1 | In-frame | 7176 | non-validated | 0.37259 |
| BRCA | TCGA-E2-A159-01A | TCGA-E2-A159 | GNAQ|C9orf64 | GNAQ | C9orf64 | 9 | 9 | -1 | -1 | 3 | 12 | 11 | 2 | 80409379 | 86559904 | tier1 | In-frame | 7179 | NA | 0 |
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