Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-E2-A574-01A | TCGA-E2-A574 | FGFR1|ADAM18 | FGFR1 | ADAM18 | 8 | 8 | -1 | 1 | 15 | 16 | 10 | 1.8 | 38314874 | 39463826 | tier1 | Out-of-frame | 6454 | NA | 0.38508 |
| BRCA | TCGA-D8-A13Z-01A | TCGA-D8-A13Z | FGFR2|CCDC6 | FGFR2 | CCDC6 | 10 | 10 | -1 | -1 | 26 | 23 | 19 | 0.28 | 123243212 | 61612460 | tier1 | In-frame | 6465 | NA | 0.38295 |
| BRCA | TCGA-LD-A7W5-01A | TCGA-LD-A7W5 | FGFR2|ENPP2 | FGFR2 | ENPP2 | 10 | 8 | -1 | -1 | 82 | 70 | 64 | 0.15 | 123274637 | 120650767 | tier1 | In-frame | 6466 | NA | 0.38282 |
| BRCA | TCGA-D8-A4Z1-01A | TCGA-D8-A4Z1 | FGGY|CDH17 | FGGY | CDH17 | 1 | 8 | 1 | -1 | 2 | 3 | 3 | 0.27 | 59978111 | 95174390 | tier3 | In-frame | 6516 | NA | 0.35971 |
| BRCA | TCGA-D8-A1Y0-01A | TCGA-D8-A1Y0 | FLNA|TKTL1 | FLNA | TKTL1 | X | X | -1 | 1 | 47 | 109 | 98 | 2.9 | 153602874 | 153533656 | tier1 | 5UTR-CDS | 6563 | NA | 0.37738 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | FNDC3B|NLGN1 | FNDC3B | NLGN1 | 3 | 3 | 1 | 1 | 7 | 3 | 3 | 0.016 | 171944737 | 173993105 | tier1 | Out-of-frame | 6610 | NA | 0.35935 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | FOXK2|ABCA5 | FOXK2 | ABCA5 | 17 | 17 | 1 | -1 | 16 | 12 | 12 | 0.041 | 80542064 | 67273983 | tier1 | In-frame | 6652 | NA | 0.35264 |
| BRCA | TCGA-AO-A0JG-01A | TCGA-AO-A0JG | FOXK2|SKAP1 | FOXK2 | SKAP1 | 17 | 17 | 1 | -1 | 87 | 41 | 38 | 1 | 80545148 | 46474147 | tier1 | In-frame | 6665 | NA | 0.37807 |
| BRCA | TCGA-E2-A14Q-01A | TCGA-E2-A14Q | FRAS1|DCK | FRAS1 | DCK | 4 | 4 | 1 | 1 | 4 | 6 | 5 | 1.2 | 79373508 | 71888084 | tier1 | Out-of-frame | 6705 | NA | 0.35884 |
| BRCA | TCGA-D8-A1JA-01A | TCGA-D8-A1JA | FRAS1|FAM190A | FRAS1 | FAM190A | 4 | 4 | 1 | 1 | 3 | 8 | 8 | 0.018 | 78987170 | 92519723 | tier1 | In-frame | 6706 | NA | 0.34022 |
| BRCA | TCGA-A8-A06Z-01A | TCGA-A8-A06Z | FRS2|LYZ | FRS2 | LYZ | 12 | 12 | 1 | 1 | 2368 | 1962 | 1840 | 1.3 | 69925836 | 69743888 | tier1 | 5UTR-CDS | 6762 | NA | 0.3788 |
| BRCA | TCGA-A8-A07O-01A | TCGA-A8-A07O | FRS2|LYZ | FRS2 | LYZ | 12 | 12 | 1 | 1 | 51 | 26 | 24 | 1.3 | 69925836 | 69743888 | tier1 | 5UTR-CDS | 6763 | NA | 0.3788 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | FRS2|NRG3 | FRS2 | NRG3 | 12 | 10 | 1 | 1 | 8 | 6 | 5 | 0.22 | 69925836 | 84498333 | tier1 | 5UTR-CDS | 6767 | NA | 0.3795 |
| BRCA | TCGA-BH-A1EV-01A | TCGA-BH-A1EV | FRS2|OSBPL8 | FRS2 | OSBPL8 | 12 | 12 | 1 | -1 | 36 | 24 | 22 | 0.15 | 69924740 | 76750508 | tier1 | 5UTR-CDS | 6772 | NA | 0.37951 |
| BRCA | TCGA-C8-A12M-01A | TCGA-C8-A12M | FRS2|TSPAN8 | FRS2 | TSPAN8 | 12 | 12 | 1 | -1 | 46 | 21 | 19 | 0.11 | 69864310 | 71551567 | tier1 | 5UTR-5UTR | 6793 | NA | 0.3756 |
| BRCA | TCGA-AR-A24V-01A | TCGA-AR-A24V | FSTL4|SLIT3 | FSTL4 | SLIT3 | 5 | 5 | -1 | -1 | 9 | 5 | 5 | 0.54 | 132537625 | 168114121 | tier1 | In-frame | 6813 | NA | 0.35753 |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | FTSJ3|SCN4A | FTSJ3 | SCN4A | 17 | 17 | -1 | -1 | 7 | 14 | 10 | 0.007 | 61897439 | 62019353 | tier1 | Out-of-frame | 6817 | NA | 0.35865 |
| BRCA | TCGA-AR-A1AR-01A | TCGA-AR-A1AR | FUBP1|SLC44A5 | FUBP1 | SLC44A5 | 1 | 1 | -1 | -1 | 3 | 6 | 6 | 1.4 | 78444569 | 75766370 | tier1 | Out-of-frame | 6823 | NA | 0.36536 |
| BRCA | TCGA-AR-A250-01A | TCGA-AR-A250 | FUT10|GAB2 | FUT10 | GAB2 | 8 | 11 | -1 | -1 | 49 | 28 | 26 | 0.068 | 33310734 | 77961446 | tier1 | In-frame | 6830 | NA | 0.3865 |
| BRCA | TCGA-C8-A135-01A | TCGA-C8-A135 | FXR1|RIMS2 | FXR1 | RIMS2 | 3 | 8 | 1 | 1 | 2 | 12 | 10 | 0.93 | 180651174 | 105080740 | tier3 | Out-of-frame | 6841 | NA | 0.36655 |
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