Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A8-A07L-01A | TCGA-A8-A07L | FAM73B|NUP188 | FAM73B | NUP188 | 9 | 9 | 1 | 1 | 4 | 3 | 3 | 0.22 | 131804793 | 131760430 | tier1 | Out-of-frame | 6203 | NA | 0.34208 |
| BRCA | TCGA-OL-A5RW-01A | TCGA-OL-A5RW | FAM98B|RASGRP1 | FAM98B | RASGRP1 | 15 | 15 | 1 | -1 | 8 | 1 | 1 | 0.79 | 38773660 | 38798121 | tier2 | In-frame | 6223 | NA | 0.37294 |
| BRCA | TCGA-E9-A247-01A | TCGA-E9-A247 | FAS|CTNND2 | FAS | CTNND2 | 10 | 5 | 1 | -1 | 3 | 2 | 2 | 0.006 | 90762951 | 11023091 | tier2 | In-frame | 6261 | NA | 0.38805 |
| BRCA | TCGA-A2-A0T1-01A | TCGA-A2-A0T1 | FBXL20|ABCA6 | FBXL20 | ABCA6 | 17 | 17 | -1 | -1 | 2 | 1 | 1 | 2 | 37557614 | 67124945 | tier2 | In-frame | 6300 | NA | 0.34373 |
| BRCA | TCGA-A1-A0SM-01A | TCGA-A1-A0SM | FBXL20|GDPD5 | FBXL20 | GDPD5 | 17 | 11 | -1 | -1 | 16 | 8 | 7 | 1.5 | 37457254 | 75167861 | tier1 | In-frame | 6305 | non-validated | 0.343 |
| BRCA | TCGA-AR-A254-01A | TCGA-AR-A254 | FBXL20|NOTCH2 | FBXL20 | NOTCH2 | 17 | 1 | -1 | -1 | 6 | 9 | 8 | 0.35 | 37557614 | 120465401 | tier1 | Out-of-frame | 6316 | NA | 0.38459 |
| BRCA | TCGA-A2-A0EX-01A | TCGA-A2-A0EX | FBXO16|ADAM32 | FBXO16 | ADAM32 | 8 | 8 | -1 | 1 | 8 | 5 | 4 | 1.5 | 28304688 | 39131831 | tier1 | Out-of-frame | 6338 | NA | 0.3517 |
| BRCA | TCGA-BH-A0H7-01A | TCGA-BH-A0H7 | FBXO46|SYMPK | FBXO46 | SYMPK | 19 | 19 | -1 | -1 | 6 | 22 | 20 | 0.13 | 46234107 | 46338486 | tier1 | 5UTR-CDS | 6362 | NA | 0.36624 |
| BRCA | TCGA-D8-A1JG-01B | TCGA-D8-A1JG | FBXW7|TMEM154 | FBXW7 | TMEM154 | 4 | 4 | -1 | -1 | 5 | 2 | 2 | 0.003 | 153456093 | 153549713 | tier1 | 5UTR-CDS | 6377 | NA | 0.36698 |
| BRCA | TCGA-BH-A1EV-01A | TCGA-BH-A1EV | FCGR2A|SPTA1 | FCGR2A | SPTA1 | 1 | 1 | 1 | -1 | 4 | 6 | 6 | 2.5 | 161476381 | 158632735 | tier1 | Out-of-frame | 6381 | NA | 0.37944 |
| BRCA | TCGA-GM-A2DF-01A | TCGA-GM-A2DF | FCHSD2|C11orf83 | FCHSD2 | C11orf83 | 11 | 11 | -1 | 1 | 9 | 5 | 5 | 1.3 | 72851076 | 62438756 | tier1 | CDS-5UTR | 6389 | non-validated | 0 |
| BRCA | TCGA-BH-A18I-01A | TCGA-BH-A18I | FCHSD2|CPT1A | FCHSD2 | CPT1A | 11 | 11 | -1 | -1 | 87 | 56 | 52 | 2.9 | 72794740 | 68564401 | tier1 | 5UTR-CDS | 6392 | NA | 0.37047 |
| BRCA | TCGA-A8-A093-01A | TCGA-A8-A093 | FCHSD2|DTX4 | FCHSD2 | DTX4 | 11 | 11 | -1 | 1 | 2 | 2 | 2 | 0.074 | 72632873 | 58949212 | tier2 | Out-of-frame | 6393 | NA | 0.36868 |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | FCHSD2|FAM168A | FCHSD2 | FAM168A | 11 | 11 | -1 | -1 | 20 | 27 | 25 | 0.096 | 72578910 | 73179537 | tier1 | CDS-5UTR | 6395 | NA | 0.36368 |
| BRCA | TCGA-A8-A07E-01A | TCGA-A8-A07E | FCHSD2|PLEKHB1 | FCHSD2 | PLEKHB1 | 11 | 11 | -1 | 1 | 4 | 1 | 1 | 0.11 | 72851076 | 73371798 | tier3 | Out-of-frame | 6402 | NA | 0.36683 |
| BRCA | TCGA-C8-A1HO-01A | TCGA-C8-A1HO | FCHSD2|RALYL | FCHSD2 | RALYL | 11 | 8 | -1 | 1 | 4 | 1 | 1 | 1.5 | 72695133 | 85833129 | tier3 | In-frame | 6404 | NA | 0.36798 |
| BRCA | TCGA-BH-A201-01A | TCGA-BH-A201 | FCHSD2|RNF169 | FCHSD2 | RNF169 | 11 | 11 | -1 | 1 | 29 | 20 | 17 | 0.36 | 72613588 | 74500671 | tier1 | Out-of-frame | 6405 | NA | 0.36832 |
| BRCA | TCGA-B6-A0RL-01A | TCGA-B6-A0RL | FCHSD2|SHANK2 | FCHSD2 | SHANK2 | 11 | 11 | -1 | -1 | 85 | 38 | 34 | 0.41 | 72851076 | 70338570 | tier1 | Out-of-frame | 6406 | NA | 0.37428 |
| BRCA | TCGA-EW-A6SC-01A | TCGA-EW-A6SC | FCHSD2|SHANK2 | FCHSD2 | SHANK2 | 11 | 11 | -1 | -1 | 46 | 25 | 23 | 0.41 | 72632873 | 70319544 | tier1 | Out-of-frame | 6407 | NA | 0.37428 |
| BRCA | TCGA-E2-A1LL-01A | TCGA-E2-A1LL | FGD4|ABCC9 | FGD4 | ABCC9 | 12 | 12 | 1 | -1 | 11 | 16 | 16 | 0.005 | 32717223 | 22040868 | tier1 | 5UTR-CDS | 6428 | non-validated | 0.37158 |
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