Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-C8-A12P-01A | TCGA-C8-A12P | ERC1|TOMM34 | ERC1 | TOMM34 | 12 | 20 | 1 | -1 | 59 | 39 | 37 | 0.2 | 1517413 | 43572220 | tier1 | Out-of-frame | 5755 | NA | 0.36928 |
| BRCA | TCGA-AN-A0AR-01A | TCGA-AN-A0AR | ESCO1|KANK1 | ESCO1 | KANK1 | 18 | 9 | -1 | 1 | 7 | 4 | 3 | 1.2 | 19180584 | 710804 | tier1 | 5UTR-CDS | 5800 | NA | 0.35179 |
| BRCA | TCGA-A2-A3KD-01A | TCGA-A2-A3KD | ESR1|ASPH | ESR1 | ASPH | 6 | 8 | 1 | -1 | 518 | 607 | 305 | 0.029 | 152201906 | 62416068 | tier2 | Out-of-frame | 5806 | NA | 0.38645 |
| BRCA | TCGA-A2-A0EY-01A | TCGA-A2-A0EY | ESRP2|SLC7A6 | ESRP2 | SLC7A6 | 16 | 16 | -1 | 1 | 25 | 20 | 17 | 0.13 | 68265081 | 68321649 | tier1 | In-frame | 5834 | non-validated | 0.33265 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | ESYT2|C7orf58 | ESYT2 | C7orf58 | 7 | 7 | -1 | 1 | 13 | 25 | 23 | 0.33 | 158552177 | 120704292 | tier1 | In-frame | 5840 | NA | 0 |
| BRCA | TCGA-E9-A5UO-01A | TCGA-E9-A5UO | ETFA|STRA6 | ETFA | STRA6 | 15 | 15 | -1 | -1 | 18 | 9 | 9 | 0.14 | 76566753 | 74494623 | tier1 | CDS-5UTR | 5844 | NA | 0.34097 |
| BRCA | TCGA-OL-A5RZ-01A | TCGA-OL-A5RZ | ETNK1|RCAN2 | ETNK1 | RCAN2 | 12 | 6 | 1 | -1 | 16 | 7 | 7 | 3.3 | 22778520 | 46216633 | tier1 | In-frame | 5854 | NA | 0.34557 |
| BRCA | TCGA-AO-A03U-01B | TCGA-AO-A03U | ETV6|NTRK3 | ETV6 | NTRK3 | 12 | 15 | 1 | -1 | 52 | 42 | 40 | 5.5 | 12022903 | 88483984 | tier1 | In-frame | 5868 | NA | 0.39062 |
| BRCA | TCGA-EW-A2FS-01A | TCGA-EW-A2FS | EXOC7|USP22 | EXOC7 | USP22 | 17 | 17 | -1 | -1 | 3 | 7 | 7 | 0.25 | 74097352 | 20911309 | tier1 | Out-of-frame | 5918 | NA | 0.36614 |
| BRCA | TCGA-BH-A18V-01A | TCGA-BH-A18V | EYA3|KIAA0247 | EYA3 | KIAA0247 | 1 | 14 | -1 | 1 | 8 | 4 | 4 | 0.002 | 28362055 | 70125230 | tier1 | CDS-5UTR | 5948 | NA | 0.36004 |
| BRCA | TCGA-A2-A0CY-01A | TCGA-A2-A0CY | EZR|RB1CC1 | EZR | RB1CC1 | 6 | 8 | -1 | -1 | 32 | 27 | 23 | 0.73 | 159206341 | 53537347 | tier1 | Out-of-frame | 5965 | NA | 0.37015 |
| BRCA | TCGA-E9-A1R7-01A | TCGA-E9-A1R7 | FAF1|HCRTR1 | FAF1 | HCRTR1 | 1 | 1 | -1 | 1 | 7 | 4 | 3 | 1.1 | 50956260 | 32098037 | tier1 | Out-of-frame | 5977 | NA | 0.373 |
| BRCA | TCGA-AR-A24W-01A | TCGA-AR-A24W | FAM122B|GPC4 | FAM122B | GPC4 | X | X | -1 | -1 | 3 | 4 | 4 | 0.062 | 133915851 | 132458564 | tier1 | Out-of-frame | 6025 | NA | 0.35777 |
| BRCA | TCGA-A8-A08X-01A | TCGA-A8-A08X | FAM129B|OLFM1 | FAM129B | OLFM1 | 9 | 9 | -1 | 1 | 65 | 123 | 112 | 0.36 | 130331099 | 137982041 | tier1 | Out-of-frame | 6039 | NA | 0.34617 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | FAM149B1|KCNMA1 | FAM149B1 | KCNMA1 | 10 | 10 | 1 | -1 | 11 | 17 | 17 | 1.3 | 74970196 | 78778857 | tier1 | Out-of-frame | 6061 | NA | 0.36581 |
| BRCA | TCGA-AC-A3QQ-01A | TCGA-AC-A3QQ | FAM168A|SLC13A2 | FAM168A | SLC13A2 | 11 | 17 | -1 | 1 | 2 | 4 | 4 | 0.7 | 73308968 | 26816232 | tier2 | 5UTR-CDS | 6089 | NA | 0.34316 |
| BRCA | TCGA-D8-A1XZ-01A | TCGA-D8-A1XZ | FAM172A|EFNA5 | FAM172A | EFNA5 | 5 | 5 | -1 | -1 | 29 | 20 | 16 | 0.82 | 93447216 | 106763210 | tier1 | 5UTR-CDS | 6099 | NA | 0.36594 |
| BRCA | TCGA-C8-A12U-01A | TCGA-C8-A12U | FAM19A2|KCNMB4 | FAM19A2 | KCNMB4 | 12 | 12 | -1 | 1 | 3 | 4 | 4 | 2.4 | 62417433 | 70824265 | tier1 | 5UTR-CDS | 6146 | NA | 0.33774 |
| BRCA | TCGA-A8-A09M-01A | TCGA-A8-A09M | FAM38A|APRT | FAM38A | APRT | 16 | 16 | -1 | -1 | 100 | 126 | 116 | 0.018 | 88792692 | 88876248 | tier1 | Out-of-frame | 6163 | NA | 0.34388 |
| BRCA | TCGA-EW-A2FW-01A | TCGA-EW-A2FW | FAM69A|NTNG1 | FAM69A | NTNG1 | 1 | 1 | -1 | 1 | 5 | 6 | 4 | 5.2 | 93426933 | 108023233 | tier1 | Out-of-frame | 6200 | NA | 0.34222 |
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