Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-B6-A0I6-01A | TCGA-B6-A0I6 | ENG|AK1 | ENG | AK1 | 9 | 9 | -1 | -1 | 45 | 30 | 28 | 0.86 | 130605373 | 130630791 | tier4 | In-frame | 5584 | non-validated | 0.36678 |
| BRCA | TCGA-A8-A08G-01A | TCGA-A8-A08G | ENOX2|OSBPL5 | ENOX2 | OSBPL5 | X | 11 | -1 | -1 | 15 | 10 | 10 | 7.1 | 129761932 | 3150399 | tier1 | CDS-5UTR | 5594 | NA | 0.36417 |
| BRCA | TCGA-OL-A6VO-01A | TCGA-OL-A6VO | ENPP1|RIPPLY2 | ENPP1 | RIPPLY2 | 6 | 6 | 1 | 1 | 2 | 2 | 1 | 2.1 | 132129415 | 84563816 | tier2 | In-frame | 5598 | NA | 0.35911 |
| BRCA | TCGA-E2-A10C-01A | TCGA-E2-A10C | EPB41L1|BCL2A1 | EPB41L1 | BCL2A1 | 20 | 15 | 1 | -1 | 2 | 2 | 2 | 3.7 | 34709738 | 80253516 | tier4 | 5UTR-CDS | 5636 | NA | 0.36755 |
| BRCA | TCGA-A8-A079-01A | TCGA-A8-A079 | EPB41L1|GHRH | EPB41L1 | GHRH | 20 | 20 | 1 | -1 | 281 | 351 | 302 | 0.004 | 34700402 | 35885311 | tier1 | 5UTR-5UTR | 5640 | NA | 0.36643 |
| BRCA | TCGA-BH-A0HB-01A | TCGA-BH-A0HB | EPB41L3|LAMA1 | EPB41L3 | LAMA1 | 18 | 18 | -1 | -1 | 6 | 6 | 6 | 0.13 | 5395066 | 7037750 | tier1 | In-frame | 5652 | NA | 0.37643 |
| BRCA | TCGA-A2-A04P-01A | TCGA-A2-A04P | EPC2|THSD7B | EPC2 | THSD7B | 2 | 2 | 1 | 1 | 2 | 2 | 2 | 2.8 | 149447942 | 137813990 | tier2 | In-frame | 5664 | validated | 0.34752 |
| BRCA | TCGA-LL-A7SZ-01A | TCGA-LL-A7SZ | EPHA6|C11orf80 | EPHA6 | C11orf80 | 3 | 11 | 1 | 1 | 6 | 5 | 5 | 4 | 96963131 | 66583524 | tier1 | In-frame | 5672 | NA | 0 |
| BRCA | TCGA-BH-A0HW-01A | TCGA-BH-A0HW | EPHA6|RG9MTD1 | EPHA6 | RG9MTD1 | 3 | 3 | 1 | 1 | 5 | 1 | 1 | 0.89 | 96706837 | 101283614 | tier2 | CDS-5UTR | 5674 | NA | 0.36659 |
| BRCA | TCGA-BH-A204-01A | TCGA-BH-A204 | ERBB2|CDK12 | ERBB2 | CDK12 | 17 | 17 | 1 | 1 | 175 | 94 | 75 | 0.41 | 37868701 | 37680927 | tier1 | In-frame | 5717 | NA | 0.38259 |
| BRCA | TCGA-UU-A93S-01A | TCGA-UU-A93S | ERBB2|CLDN7 | ERBB2 | CLDN7 | 17 | 17 | 1 | -1 | 2 | 2 | 2 | 1.2 | 37884915 | 7166264 | tier3 | 3UTR-5UTR | 5718 | NA | 0.3841 |
| BRCA | TCGA-AR-A254-01A | TCGA-AR-A254 | ERBB2|SLC29A3 | ERBB2 | SLC29A3 | 17 | 10 | 1 | 1 | 724 | 753 | 688 | 0.032 | 37883256 | 73121711 | tier1 | Out-of-frame | 5728 | NA | 0.38331 |
| BRCA | TCGA-A2-A0YE-01A | TCGA-A2-A0YE | ERBB2|SLC39A11 | ERBB2 | SLC39A11 | 17 | 17 | 1 | -1 | 8 | 4 | 4 | 0.48 | 37871789 | 71084914 | tier1 | CDS-5UTR | 5729 | NA | 0.38394 |
| BRCA | TCGA-GM-A2DD-01A | TCGA-GM-A2DD | ERBB2IP|C5orf44 | ERBB2IP | C5orf44 | 5 | 5 | 1 | 1 | 2 | 1 | 1 | 0.99 | 65288735 | 64931128 | tier4 | Out-of-frame | 5734 | NA | 0 |
| BRCA | TCGA-PE-A5DC-01A | TCGA-PE-A5DC | ERBB2IP|NLN | ERBB2IP | NLN | 5 | 5 | 1 | 1 | 51 | 53 | 50 | 0.018 | 65222634 | 65105342 | tier1 | 5UTR-CDS | 5736 | NA | 0.38005 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | ERBB2IP|PPWD1 | ERBB2IP | PPWD1 | 5 | 5 | 1 | 1 | 8 | 8 | 7 | 2.3 | 65222634 | 64872706 | tier1 | 5UTR-CDS | 5737 | NA | 0.38005 |
| BRCA | TCGA-A2-A1FW-01A | TCGA-A2-A1FW | ERBB2IP|ZBTB10 | ERBB2IP | ZBTB10 | 5 | 8 | 1 | 1 | 11 | 8 | 8 | 0.26 | 65290692 | 81411729 | tier1 | Out-of-frame | 5739 | NA | 0.38436 |
| BRCA | TCGA-B6-A0IG-01A | TCGA-B6-A0IG | ERC1|PIK3C2G | ERC1 | PIK3C2G | 12 | 12 | 1 | 1 | 19 | 20 | 19 | 5.7 | 1299218 | 18641383 | tier1 | In-frame | 5750 | NA | 0.36365 |
| BRCA | TCGA-C8-A1HJ-01A | TCGA-C8-A1HJ | ERC1|RET | ERC1 | RET | 12 | 10 | 1 | 1 | 16 | 12 | 12 | 0.55 | 1250953 | 43612032 | tier1 | In-frame | 5751 | NA | 0.38876 |
| BRCA | TCGA-E2-A9RU-01A | TCGA-E2-A9RU | ERC1|TACC3 | ERC1 | TACC3 | 12 | 4 | 1 | 1 | 7 | 12 | 12 | 0.022 | 1192746 | 1741429 | tier1 | In-frame | 5754 | NA | 0.36704 |
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