Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A1EU-01A | TCGA-BH-A1EU | DPYD|STAB2 | DPYD | STAB2 | 1 | 12 | -1 | 1 | 8 | 3 | 3 | 0.031 | 98348820 | 104054109 | tier1 | In-frame | 5098 | NA | 0.36177 |
| BRCA | TCGA-E2-A1LG-01A | TCGA-E2-A1LG | DSCR3|IGSF5 | DSCR3 | IGSF5 | 21 | 21 | -1 | 1 | 4 | 7 | 7 | 3.3 | 38639539 | 41137462 | tier1 | Out-of-frame | 5120 | non-validated | 0.35106 |
| BRCA | TCGA-AN-A04A-01A | TCGA-AN-A04A | DST|KIAA0319L | DST | KIAA0319L | 6 | 1 | -1 | -1 | 19 | 8 | 7 | 1.2 | 56564451 | 35900682 | tier1 | Out-of-frame | 5135 | NA | 0.37013 |
| BRCA | TCGA-E2-A15T-01A | TCGA-E2-A15T | DUS2L|UNC5C | DUS2L | UNC5C | 16 | 4 | 1 | -1 | 10 | 5 | 5 | 0.7 | 68072052 | 96171818 | tier1 | In-frame | 5174 | NA | 0.37238 |
| BRCA | TCGA-B6-A0I8-01A | TCGA-B6-A0I8 | DYNC2H1|KCNQ5 | DYNC2H1 | KCNQ5 | 11 | 6 | 1 | 1 | 3 | 1 | 1 | 0.27 | 103339433 | 73787045 | tier4 | Out-of-frame | 5219 | NA | 0.36578 |
| BRCA | TCGA-E9-A22D-01A | TCGA-E9-A22D | EFHA1|ATP8A2 | EFHA1 | ATP8A2 | 13 | 13 | -1 | 1 | 13 | 17 | 16 | 0.65 | 22178078 | 26402256 | tier1 | In-frame | 5340 | NA | 0.36047 |
| BRCA | TCGA-BH-A0HY-01A | TCGA-BH-A0HY | EFHC1|LPHN3 | EFHC1 | LPHN3 | 6 | 4 | 1 | 1 | 3 | 6 | 6 | 0.38 | 52288965 | 62362839 | tier1 | CDS-5UTR | 5346 | NA | 0.35764 |
| BRCA | TCGA-AR-A0TT-01A | TCGA-AR-A0TT | EFNA3|USP21 | EFNA3 | USP21 | 1 | 1 | 1 | 1 | 27 | 3 | 3 | 0.52 | 155058681 | 161130410 | tier1 | CDS-5UTR | 5354 | NA | 0.36371 |
| BRCA | TCGA-E2-A109-01A | TCGA-E2-A109 | EFNA4|C20orf96 | EFNA4 | C20orf96 | 1 | 20 | 1 | -1 | 7 | 4 | 3 | 0.24 | 155039916 | 264722 | tier1 | In-frame | 5355 | non-validated | 0 |
| BRCA | TCGA-E2-A1LE-01A | TCGA-E2-A1LE | EFNA4|FLAD1 | EFNA4 | FLAD1 | 1 | 1 | 1 | 1 | 5 | 3 | 2 | 0.41 | 155039916 | 154960581 | tier1 | Out-of-frame | 5357 | NA | 0.36692 |
| BRCA | TCGA-BH-A0AV-01A | TCGA-BH-A0AV | EFR3A|ASAP1 | EFR3A | ASAP1 | 8 | 8 | 1 | -1 | 2 | 2 | 2 | 0.096 | 133008744 | 131249240 | tier3 | In-frame | 5359 | non-validated | 0.37135 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | EHHADH|ABCC5 | EHHADH | ABCC5 | 3 | 3 | -1 | -1 | 2 | 1 | 1 | 0.81 | 184922204 | 183696439 | tier3 | In-frame | 5406 | NA | 0.35562 |
| BRCA | TCGA-A7-A6VY-01A | TCGA-A7-A6VY | EHMT1|GRIN1 | EHMT1 | GRIN1 | 9 | 9 | 1 | 1 | 3 | 2 | 2 | 0.27 | 140611634 | 140036465 | tier1 | In-frame | 5409 | NA | 0.3732 |
| BRCA | TCGA-C8-A26Y-01A | TCGA-C8-A26Y | EIF2C2|PTK2 | EIF2C2 | PTK2 | 8 | 8 | -1 | -1 | 7 | 14 | 11 | 7.7 | 141645584 | 141678523 | tier1 | Out-of-frame | 5437 | NA | 0.38833 |
| BRCA | TCGA-E2-A1II-01A | TCGA-E2-A1II | EIF2C2|PTK2 | EIF2C2 | PTK2 | 8 | 8 | -1 | -1 | 2 | 4 | 3 | 7.7 | 141645584 | 141874498 | tier4 | Out-of-frame | 5438 | NA | 0.38833 |
| BRCA | TCGA-E2-A1LE-01A | TCGA-E2-A1LE | EIF2C2|PTK2 | EIF2C2 | PTK2 | 8 | 8 | -1 | -1 | 7 | 9 | 8 | 7.7 | 141645584 | 141696793 | tier1 | Out-of-frame | 5439 | NA | 0.38833 |
| BRCA | TCGA-AC-A7VB-01A | TCGA-AC-A7VB | ELL|INSR | ELL | INSR | 19 | 19 | -1 | -1 | 26 | 9 | 9 | 0.37 | 18632731 | 7267907 | tier1 | Out-of-frame | 5517 | NA | 0.39013 |
| BRCA | TCGA-AC-A2QH-01A | TCGA-AC-A2QH | ELP4|CFTR | ELP4 | CFTR | 11 | 7 | 1 | 1 | 4 | 5 | 5 | 0.43 | 31616448 | 117170953 | tier1 | In-frame | 5541 | NA | 0.37351 |
| BRCA | TCGA-GI-A2C9-01A | TCGA-GI-A2C9 | EMP1|ETV6 | EMP1 | ETV6 | 12 | 12 | 1 | 1 | 10 | 5 | 5 | 0.75 | 13349806 | 12043875 | tier1 | 5UTR-CDS | 5573 | non-validated | 0.36701 |
| BRCA | TCGA-C8-A135-01A | TCGA-C8-A135 | ENDOV|SLC26A11 | ENDOV | SLC26A11 | 17 | 17 | 1 | 1 | 11 | 7 | 7 | 0.29 | 78389621 | 78210727 | tier1 | Out-of-frame | 5582 | NA | 0.33862 |
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