Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A18V-01A | TCGA-BH-A18V | DDR2|GAB1 | DDR2 | GAB1 | 1 | 4 | 1 | 1 | 3 | 8 | 8 | 3.2 | 162688935 | 144336630 | tier1 | Out-of-frame | 4643 | NA | 0.38497 |
| BRCA | TCGA-E9-A1RH-01A | TCGA-E9-A1RH | DDX5|ART1 | DDX5 | ART1 | 17 | 11 | -1 | 1 | 167 | 48 | 45 | 2.1 | 62499548 | 3685322 | tier1 | In-frame | 4669 | NA | 0.37577 |
| BRCA | TCGA-BH-A1EV-01A | TCGA-BH-A1EV | DDX52|TMIGD1 | DDX52 | TMIGD1 | 17 | 17 | -1 | -1 | 9 | 1 | 1 | 3.3 | 36002139 | 28656547 | tier2 | In-frame | 4673 | NA | 0.34939 |
| BRCA | TCGA-E2-A1IO-01A | TCGA-E2-A1IO | DEPDC5|CDH19 | DEPDC5 | CDH19 | 22 | 18 | 1 | -1 | 3 | 3 | 3 | 0.35 | 32270391 | 64239553 | tier1 | CDS-5UTR | 4722 | NA | 0.35369 |
| BRCA | TCGA-EW-A1J6-01A | TCGA-EW-A1J6 | DERA|LRP6 | DERA | LRP6 | 12 | 12 | 1 | -1 | 12 | 15 | 15 | 0.05 | 16135370 | 12302087 | tier1 | Out-of-frame | 4729 | NA | 0.36838 |
| BRCA | TCGA-A1-A0SO-01A | TCGA-A1-A0SO | DIXDC1|GAB2 | DIXDC1 | GAB2 | 11 | 11 | 1 | -1 | 18 | 30 | 30 | 0.11 | 111808283 | 77991947 | tier1 | In-frame | 4862 | NA | 0.38814 |
| BRCA | TCGA-E9-A229-01A | TCGA-E9-A229 | DLG5|PCDH15 | DLG5 | PCDH15 | 10 | 10 | -1 | -1 | 11 | 10 | 7 | 0.7 | 79685975 | 56287637 | tier1 | In-frame | 4888 | NA | 0.37485 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | DNER|TRIP12 | DNER | TRIP12 | 2 | 2 | -1 | -1 | 3 | 3 | 3 | 0.062 | 230411663 | 230650571 | tier1 | In-frame | 4961 | NA | 0.36358 |
| BRCA | TCGA-GM-A2DB-01A | TCGA-GM-A2DB | DNM2|ILF3 | DNM2 | ILF3 | 19 | 19 | 1 | 1 | 5 | 8 | 8 | 0.35 | 10934575 | 10798022 | tier1 | Out-of-frame | 4974 | NA | 0.38551 |
| BRCA | TCGA-UU-A93S-01A | TCGA-UU-A93S | DNM2|ILF3 | DNM2 | ILF3 | 19 | 19 | 1 | 1 | 3 | 4 | 4 | 0.35 | 10829079 | 10787839 | tier1 | Out-of-frame | 4975 | NA | 0.38551 |
| BRCA | TCGA-D8-A1JL-01A | TCGA-D8-A1JL | DNM2|PPAN-P2RY11 | DNM2 | PPAN-P2RY11 | 19 | 19 | 1 | 1 | 39 | 7 | 6 | 0.54 | 10913034 | 10224309 | tier1 | Out-of-frame | 4979 | NA | 0.38185 |
| BRCA | TCGA-OL-A5D6-01A | TCGA-OL-A5D6 | DNM2|SLC44A2 | DNM2 | SLC44A2 | 19 | 19 | 1 | 1 | 12 | 14 | 13 | 0.057 | 10886582 | 10736929 | tier1 | In-frame | 4990 | NA | 0.37726 |
| BRCA | TCGA-UU-A93S-01A | TCGA-UU-A93S | DNM2|TGIF1 | DNM2 | TGIF1 | 19 | 18 | 1 | 1 | 5 | 8 | 8 | 0.61 | 10870487 | 3418141 | tier1 | CDS-5UTR | 4992 | NA | 0.38448 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | DNMT1|ICAM3 | DNMT1 | ICAM3 | 19 | 19 | -1 | -1 | 4 | 2 | 2 | 1.2 | 10283766 | 10446652 | tier1 | Out-of-frame | 5006 | NA | 0.378 |
| BRCA | TCGA-C8-A1HN-01A | TCGA-C8-A1HN | DOCK1|PCDH15 | DOCK1 | PCDH15 | 10 | 10 | 1 | -1 | 38 | 27 | 24 | 0.64 | 129179632 | 56287637 | tier1 | Out-of-frame | 5023 | NA | 0.37497 |
| BRCA | TCGA-AR-A24Z-01A | TCGA-AR-A24Z | DOCK7|INADL | DOCK7 | INADL | 1 | 1 | -1 | 1 | 13 | 8 | 5 | 0.63 | 62958375 | 62626580 | tier1 | Out-of-frame | 5044 | non-validated | 0.37322 |
| BRCA | TCGA-BH-A0EE-01A | TCGA-BH-A0EE | DOPEY2|TRPM2 | DOPEY2 | TRPM2 | 21 | 21 | 1 | 1 | 18 | 16 | 16 | 0.49 | 37537169 | 45825025 | tier1 | In-frame | 5060 | NA | 0.3555 |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | DOT1L|EPB41L2 | DOT1L | EPB41L2 | 19 | 6 | 1 | -1 | 13 | 13 | 12 | 0.008 | 2180755 | 131277639 | tier1 | CDS-5UTR | 5062 | NA | 0.36837 |
| BRCA | TCGA-BH-A0B2-01A | TCGA-BH-A0B2 | DPM1|EZR | DPM1 | EZR | 20 | 6 | -1 | -1 | 21 | 21 | 15 | 0.13 | 49574900 | 159197536 | tier1 | In-frame | 5076 | NA | 0.37114 |
| BRCA | TCGA-A8-A091-01A | TCGA-A8-A091 | DPY19L1|NRXN2 | DPY19L1 | NRXN2 | 7 | 11 | -1 | -1 | 2 | 4 | 4 | 1.2 | 35050080 | 64387844 | tier4 | Out-of-frame | 5088 | NA | 0.36676 |
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