Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A8-A08L-01A | TCGA-A8-A08L | CTBP2|ADAM12 | CTBP2 | ADAM12 | 10 | 10 | -1 | -1 | 11 | 29 | 27 | 0.085 | 126799559 | 128019078 | tier1 | 5UTR-CDS | 4307 | non-validated | 0.38341 |
| BRCA | TCGA-AR-A1AS-01A | TCGA-AR-A1AS | CTNNB1|SLC38A5 | CTNNB1 | SLC38A5 | 3 | X | 1 | -1 | 2 | 10 | 4 | 0.1 | 41281934 | 48327824 | tier3 | 3UTR-5UTR | 4362 | NA | 0.37775 |
| BRCA | TCGA-E2-A14N-01A | TCGA-E2-A14N | CTNNB1|THRB | CTNNB1 | THRB | 3 | 3 | 1 | -1 | 3 | 5 | 5 | 0.023 | 41241161 | 24270492 | tier1 | 5UTR-5UTR | 4364 | NA | 0.37814 |
| BRCA | TCGA-E9-A244-01A | TCGA-E9-A244 | CTNND1|DDAH2 | CTNND1 | DDAH2 | 11 | 6 | 1 | -1 | 68 | 79 | 71 | 0.11 | 57529518 | 31696522 | tier1 | 5UTR-CDS | 4369 | NA | 0.3805 |
| BRCA | TCGA-AR-A1AH-01A | TCGA-AR-A1AH | CTNND1|TMX2 | CTNND1 | TMX2 | 11 | 11 | 1 | 1 | 37 | 25 | 23 | 0.009 | 57529518 | 57505080 | tier1 | 5UTR-CDS | 4375 | NA | 0.3799 |
| BRCA | TCGA-A8-A07O-01A | TCGA-A8-A07O | CTTN|ANO1 | CTTN | ANO1 | 11 | 11 | 1 | 1 | 131 | 91 | 78 | 0.046 | 70256066 | 69933858 | tier1 | In-frame | 4410 | NA | 0.38053 |
| BRCA | TCGA-E9-A228-01A | TCGA-E9-A228 | CTTN|FOLR1 | CTTN | FOLR1 | 11 | 11 | 1 | 1 | 298 | 440 | 410 | 0.044 | 70244720 | 71903210 | tier1 | 5UTR-5UTR | 4416 | NA | 0.38056 |
| BRCA | TCGA-E9-A1NE-01A | TCGA-E9-A1NE | CUL3|IRS1 | CUL3 | IRS1 | 2 | 2 | -1 | -1 | 203 | 97 | 92 | 0.034 | 225422376 | 227600966 | tier1 | CDS-3UTR | 4435 | NA | 0.38453 |
| BRCA | TCGA-OL-A66P-01A | TCGA-OL-A66P | CXCL16|TEKT1 | CXCL16 | TEKT1 | 17 | 17 | -1 | -1 | 3 | 3 | 3 | 3.4 | 4641703 | 6722677 | tier1 | In-frame | 4477 | NA | 0.33845 |
| BRCA | TCGA-S3-A6ZF-01A | TCGA-S3-A6ZF | CYB5R4|CNTN6 | CYB5R4 | CNTN6 | 6 | 3 | 1 | 1 | 8 | 2 | 1 | 4.4 | 84574047 | 1189611 | tier2 | CDS-5UTR | 4487 | NA | 0.35505 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | CYTH1|MRC2 | CYTH1 | MRC2 | 17 | 17 | -1 | 1 | 47 | 25 | 24 | 0.2 | 76732774 | 60741909 | tier1 | NA | 4513 | NA | 0.37287 |
| BRCA | TCGA-A2-A0T1-01A | TCGA-A2-A0T1 | DAB2IP|HTN3 | DAB2IP | HTN3 | 9 | 4 | 1 | 1 | 12 | 3 | 3 | 0.64 | 124441060 | 70896445 | tier1 | CDS-5UTR | 4533 | NA | 0.37444 |
| BRCA | TCGA-BH-A0H7-01A | TCGA-BH-A0H7 | DAG1|ZNF589 | DAG1 | ZNF589 | 3 | 3 | 1 | 1 | 5 | 7 | 3 | 2.4 | 49507866 | 48302303 | tier1 | 5UTR-CDS | 4538 | NA | 0.37534 |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | DAGLA|C11orf66 | DAGLA | C11orf66 | 11 | 11 | 1 | 1 | 9 | 2 | 2 | 0.002 | 61487722 | 61249254 | tier1 | CDS-5UTR | 4539 | NA | 0 |
| BRCA | TCGA-A8-A09X-01A | TCGA-A8-A09X | DAP|SNX9 | DAP | SNX9 | 5 | 6 | -1 | 1 | 12 | 14 | 12 | 0.35 | 10748287 | 158327160 | tier1 | In-frame | 4547 | validated | 0.37378 |
| BRCA | TCGA-B6-A0I8-01A | TCGA-B6-A0I8 | DAPK1|GRIN2D | DAPK1 | GRIN2D | 9 | 19 | 1 | 1 | 13 | 1 | 1 | 0.09 | 90296541 | 48922842 | tier4 | In-frame | 4551 | NA | 0.38712 |
| BRCA | TCGA-AC-A2FB-01A | TCGA-AC-A2FB | DBF4B|DYNC2H1 | DBF4B | DYNC2H1 | 17 | 11 | 1 | 1 | 5 | 7 | 6 | 5.1 | 42786734 | 103036627 | tier1 | Out-of-frame | 4561 | NA | 0.36184 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | DCAF6|MPZL1 | DCAF6 | MPZL1 | 1 | 1 | 1 | 1 | 62 | 51 | 48 | 0.6 | 167974031 | 167734820 | tier1 | In-frame | 4579 | non-validated | 0.36511 |
| BRCA | TCGA-C8-A137-01A | TCGA-C8-A137 | DCAF6|MPZL1 | DCAF6 | MPZL1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0.6 | 167921099 | 167734820 | tier2 | Out-of-frame | 4580 | NA | 0.36511 |
| BRCA | TCGA-C8-A12Q-01A | TCGA-C8-A12Q | DCAKD|PLCD3 | DCAKD | PLCD3 | 17 | 17 | -1 | -1 | 3 | 2 | 2 | 0.26 | 43138256 | 43198739 | tier1 | 5UTR-CDS | 4590 | non-validated | 0.35509 |
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