Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | CNNM2|SUFU | CNNM2 | SUFU | 10 | 10 | 1 | 1 | 13 | 3 | 3 | 0.062 | 104679858 | 104375025 | tier1 | Out-of-frame | 3920 | non-validated | 0.36833 |
| BRCA | TCGA-A7-A4SF-01A | TCGA-A7-A4SF | CNOT2|SLC45A4 | CNOT2 | SLC45A4 | 12 | 8 | 1 | -1 | 51 | 34 | 28 | 0.1 | 70713144 | 142231864 | tier1 | In-frame | 3933 | NA | 0.34754 |
| BRCA | TCGA-EW-A1OV-01A | TCGA-EW-A1OV | COG2|PCNXL2 | COG2 | PCNXL2 | 1 | 1 | 1 | -1 | 3 | 1 | 1 | 0.21 | 230814798 | 233275601 | tier3 | Out-of-frame | 3969 | NA | 0.34087 |
| BRCA | TCGA-BH-A0W7-01A | TCGA-BH-A0W7 | COG5|DPP6 | COG5 | DPP6 | 7 | 7 | -1 | 1 | 15 | 6 | 6 | 0.022 | 107052947 | 154519477 | tier1 | In-frame | 3976 | NA | 0.34791 |
| BRCA | TCGA-AO-A0JD-01A | TCGA-AO-A0JD | CORO1C|ANKS1B | CORO1C | ANKS1B | 12 | 12 | -1 | -1 | 5 | 1 | 1 | 1.9 | 109125205 | 99145300 | tier2 | 5UTR-CDS | 4075 | NA | 0.37849 |
| BRCA | TCGA-BH-A18V-01A | TCGA-BH-A18V | CP|SOX5 | CP | SOX5 | 3 | 12 | -1 | -1 | 22 | 12 | 12 | 0.33 | 148939434 | 23999127 | tier1 | Out-of-frame | 4095 | NA | 0.36613 |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | CP|WWTR1 | CP | WWTR1 | 3 | 3 | -1 | -1 | 4 | 6 | 5 | 2.9 | 148905839 | 149387678 | tier1 | CDS-5UTR | 4097 | NA | 0.36897 |
| BRCA | TCGA-AO-A1KR-01A | TCGA-AO-A1KR | CPAMD8|HAUS8 | CPAMD8 | HAUS8 | 19 | 19 | -1 | -1 | 3 | 4 | 4 | 0.088 | 17085907 | 17160986 | tier1 | Out-of-frame | 4099 | NA | 0.34872 |
| BRCA | TCGA-AR-A252-01A | TCGA-AR-A252 | CPB1|ANXA1 | CPB1 | ANXA1 | 3 | 9 | 1 | 1 | 2 | 88 | 78 | 0.04 | 148577970 | 75772570 | tier3 | 3UTR-5UTR | 4101 | NA | 0.37492 |
| BRCA | TCGA-A2-A1FW-01A | TCGA-A2-A1FW | CPD|AATF | CPD | AATF | 17 | 17 | 1 | 1 | 400 | 299 | 280 | 0.2 | 28748001 | 35376304 | tier1 | In-frame | 4107 | NA | 0.36397 |
| BRCA | TCGA-C8-A273-01A | TCGA-C8-A273 | CPD|SKAP1 | CPD | SKAP1 | 17 | 17 | 1 | -1 | 4 | 5 | 4 | 1.8 | 28712254 | 46474147 | tier1 | In-frame | 4112 | NA | 0.37572 |
| BRCA | TCGA-OL-A5D8-01A | TCGA-OL-A5D8 | CPD|TBX2 | CPD | TBX2 | 17 | 17 | 1 | 1 | 8 | 7 | 7 | 0.089 | 28748001 | 59485415 | tier1 | In-frame | 4113 | NA | 0.34645 |
| BRCA | TCGA-E2-A10C-01A | TCGA-E2-A10C | CPM|KCNMA1 | CPM | KCNMA1 | 12 | 10 | -1 | -1 | 7 | 4 | 4 | 0.47 | 69326458 | 78669854 | tier1 | In-frame | 4130 | NA | 0.36567 |
| BRCA | TCGA-E2-A15R-01A | TCGA-E2-A15R | CPT1A|ADAM2 | CPT1A | ADAM2 | 11 | 8 | -1 | -1 | 70 | 51 | 40 | 0.5 | 68540733 | 39607263 | tier1 | In-frame | 4165 | NA | 0.35974 |
| BRCA | TCGA-EW-A2FW-01A | TCGA-EW-A2FW | CPT1A|KCNG1 | CPT1A | KCNG1 | 11 | 20 | -1 | -1 | 24 | 23 | 21 | 5 | 68548108 | 49628953 | tier1 | CDS-5UTR | 4169 | NA | 0.35336 |
| BRCA | TCGA-BH-A0HP-01A | TCGA-BH-A0HP | CRBN|GRM7 | CRBN | GRM7 | 3 | 3 | -1 | 1 | 6 | 3 | 2 | 1.2 | 3209318 | 6870318 | tier1 | NA | 4188 | NA | 0.36776 |
| BRCA | TCGA-A8-A06P-01A | TCGA-A8-A06P | CRHR1|CENPP | CRHR1 | CENPP | 17 | 9 | 1 | 1 | 2 | 1 | 1 | 0.24 | 43861943 | 95373596 | tier3 | In-frame | 4217 | NA | 0.36474 |
| BRCA | TCGA-GM-A3XL-01A | TCGA-GM-A3XL | CSAD|ITGB7 | CSAD | ITGB7 | 12 | 12 | -1 | -1 | 37 | 14 | 13 | 0.077 | 53575010 | 53594978 | tier1 | 5UTR-5UTR | 4257 | non-validated | 0.36945 |
| BRCA | TCGA-BH-A1EV-01A | TCGA-BH-A1EV | CSMD2|IFI44L | CSMD2 | IFI44L | 1 | 1 | -1 | 1 | 4 | 3 | 2 | 1.2 | 34052104 | 79102717 | tier1 | Out-of-frame | 4273 | NA | 0.34395 |
| BRCA | TCGA-C8-A27A-01A | TCGA-C8-A27A | CSMD3|RIMS2 | CSMD3 | RIMS2 | 8 | 8 | -1 | 1 | 4 | 2 | 2 | 0.31 | 113599295 | 104955001 | tier1 | In-frame | 4276 | NA | 0.36465 |
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