Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | CDV3|TMEM108 | CDV3 | TMEM108 | 3 | 3 | 1 | 1 | 92 | 64 | 56 | 0.18 | 133293959 | 133098596 | tier1 | Out-of-frame | 3482 | validated | 0.34345 |
| BRCA | TCGA-E2-A14P-01A | TCGA-E2-A14P | CELSR1|CERK | CELSR1 | CERK | 22 | 22 | -1 | -1 | 37 | 12 | 12 | 0.15 | 46929524 | 47083103 | tier1 | Out-of-frame | 3508 | non-validated | 0.36308 |
| BRCA | TCGA-A2-A25F-01A | TCGA-A2-A25F | CELSR1|MAFF | CELSR1 | MAFF | 22 | 22 | -1 | 1 | 3 | 4 | 3 | 0.083 | 46768780 | 38609830 | tier1 | CDS-5UTR | 3510 | NA | 0.36968 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | CELSR2|KIAA1324 | CELSR2 | KIAA1324 | 1 | 1 | 1 | 1 | 4 | 3 | 3 | 0.37 | 109816292 | 109704516 | tier1 | Out-of-frame | 3515 | non-validated | 0.35717 |
| BRCA | TCGA-BH-A208-01A | TCGA-BH-A208 | CELSR2|SARS | CELSR2 | SARS | 1 | 1 | 1 | 1 | 20 | 21 | 20 | 2.5 | 109816292 | 109780353 | tier1 | Out-of-frame | 3519 | NA | 0.35907 |
| BRCA | TCGA-AR-A24Z-01A | TCGA-AR-A24Z | CENPF|SUSD4 | CENPF | SUSD4 | 1 | 1 | 1 | -1 | 9 | 3 | 3 | 0.37 | 214776664 | 223442017 | tier4 | 5UTR-CDS | 3521 | non-validated | 0.3556 |
| BRCA | TCGA-BH-A0BL-01A | TCGA-BH-A0BL | CGGBP1|SCN11A | CGGBP1 | SCN11A | 3 | 3 | -1 | -1 | 5 | 5 | 5 | 4.3 | 88190120 | 38968422 | tier1 | 5UTR-CDS | 3598 | NA | 0.34222 |
| BRCA | TCGA-C8-A8HR-01A | TCGA-C8-A8HR | CHD6|CHRNB4 | CHD6 | CHRNB4 | 20 | 15 | -1 | -1 | 2 | 2 | 2 | 0.024 | 40141485 | 78923674 | tier4 | In-frame | 3626 | NA | 0.36534 |
| BRCA | TCGA-AR-A1AU-01A | TCGA-AR-A1AU | CHD7|ASPH | CHD7 | ASPH | 8 | 8 | 1 | -1 | 9 | 9 | 8 | 0.57 | 61655656 | 62596747 | tier1 | Out-of-frame | 3636 | NA | 0.35171 |
| BRCA | TCGA-BH-A0B1-01A | TCGA-BH-A0B1 | CHRNB3|RB1CC1 | CHRNB3 | RB1CC1 | 8 | 8 | 1 | -1 | 45 | 36 | 35 | 1.9 | 42565577 | 53558427 | tier1 | Out-of-frame | 3706 | NA | 0.36529 |
| BRCA | TCGA-AR-A2LR-01A | TCGA-AR-A2LR | CLCN3|UBE2D3 | CLCN3 | UBE2D3 | 4 | 4 | 1 | -1 | 4 | 7 | 6 | 0.27 | 170557239 | 103731012 | tier1 | Out-of-frame | 3764 | NA | 0.37551 |
| BRCA | TCGA-S3-AA0Z-01A | TCGA-S3-AA0Z | CLEC16A|GRIN2A | CLEC16A | GRIN2A | 16 | 16 | 1 | -1 | 2 | 4 | 4 | 0.29 | 11154879 | 10032408 | tier2 | Out-of-frame | 3777 | NA | 0.37769 |
| BRCA | TCGA-A2-A0YM-01A | TCGA-A2-A0YM | CLIP1|SLC24A6 | CLIP1 | SLC24A6 | 12 | 12 | -1 | -1 | 6 | 2 | 2 | 0.69 | 122861936 | 113748160 | tier1 | Out-of-frame | 3801 | NA | 0.36186 |
| BRCA | TCGA-AC-A62V-01A | TCGA-AC-A62V | CLK2|CD244 | CLK2 | CD244 | 1 | 1 | -1 | -1 | 19 | 15 | 15 | 2.3 | 155239279 | 160808839 | tier1 | Out-of-frame | 3812 | NA | 0.36946 |
| BRCA | TCGA-A7-A26I-01B | TCGA-A7-A26I | CLPTM1|CYP2A7 | CLPTM1 | CYP2A7 | 19 | 19 | 1 | -1 | 31 | 116 | 104 | 0.2 | 45488561 | 41386533 | tier1 | Out-of-frame | 3841 | NA | 0.34784 |
| BRCA | TCGA-AR-A0TU-01A | TCGA-AR-A0TU | CLSTN1|CTNNBIP1 | CLSTN1 | CTNNBIP1 | 1 | 1 | -1 | -1 | 85 | 112 | 105 | 0.16 | 9833330 | 9910834 | tier1 | In-frame | 3852 | NA | 0.36254 |
| BRCA | TCGA-AO-A1KQ-01A | TCGA-AO-A1KQ | CLSTN3|PLCZ1 | CLSTN3 | PLCZ1 | 12 | 12 | 1 | -1 | 2 | 2 | 2 | 0.094 | 7295907 | 18837213 | tier3 | Out-of-frame | 3857 | NA | 0.35654 |
| BRCA | TCGA-AN-A0FD-01A | TCGA-AN-A0FD | CLTC|FAM129C | CLTC | FAM129C | 17 | 19 | 1 | 1 | 38 | 13 | 13 | 8.4 | 57697534 | 17648185 | tier1 | Out-of-frame | 3863 | NA | 0.37353 |
| BRCA | TCGA-EW-A1J1-01A | TCGA-EW-A1J1 | CLTC|OTOP3 | CLTC | OTOP3 | 17 | 17 | 1 | 1 | 41 | 36 | 34 | 0.5 | 57761117 | 72942756 | tier1 | Out-of-frame | 3864 | NA | 0.37249 |
| BRCA | TCGA-C8-A12Q-01A | TCGA-C8-A12Q | CNNM2|NOTCH4 | CNNM2 | NOTCH4 | 10 | 6 | 1 | -1 | 2 | 2 | 2 | 0.29 | 104679858 | 32172166 | tier2 | Out-of-frame | 3919 | validated | 0.37658 |
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