Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A7-A13D-01B | TCGA-A7-A13D | CD59|FBXO3 | CD59 | FBXO3 | 11 | 11 | -1 | -1 | 14 | 23 | 22 | 0.041 | 33731752 | 33780147 | tier1 | In-frame | 3282 | validated | 0.36801 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | CD83|LAMA2 | CD83 | LAMA2 | 6 | 6 | 1 | 1 | 5 | 3 | 3 | 0.07 | 14118296 | 129663488 | tier1 | In-frame | 3308 | NA | 0.36626 |
| BRCA | TCGA-GI-A2C9-01A | TCGA-GI-A2C9 | CD99L2|ARHGAP36 | CD99L2 | ARHGAP36 | X | X | -1 | 1 | 5 | 5 | 5 | 0.4 | 149999704 | 130215734 | tier1 | In-frame | 3312 | non-validated | 0.32805 |
| BRCA | TCGA-S3-A6ZF-01A | TCGA-S3-A6ZF | CD99L2|CXorf66 | CD99L2 | CXorf66 | X | X | -1 | -1 | 24 | 18 | 17 | 2 | 150066995 | 139040376 | tier1 | In-frame | 3313 | NA | 0 |
| BRCA | TCGA-A2-A0YE-01A | TCGA-A2-A0YE | CDC42EP4|SDK2 | CDC42EP4 | SDK2 | 17 | 17 | -1 | -1 | 55 | 34 | 31 | 0.008 | 71308032 | 71361534 | tier1 | 5UTR-CDS | 3352 | NA | 0.3578 |
| BRCA | TCGA-AN-A04A-01A | TCGA-AN-A04A | CDC42EP4|SDK2 | CDC42EP4 | SDK2 | 17 | 17 | -1 | -1 | 9 | 15 | 14 | 0.008 | 71308032 | 71348776 | tier1 | 5UTR-CDS | 3353 | NA | 0.3578 |
| BRCA | TCGA-AC-A5XU-01A | TCGA-AC-A5XU | CDC42EP5|CYTH1 | CDC42EP5 | CYTH1 | 19 | 17 | -1 | -1 | 2 | 4 | 4 | 0.35 | 54982766 | 76705814 | tier2 | 5UTR-CDS | 3356 | NA | 0.36977 |
| BRCA | TCGA-A2-A1FW-01A | TCGA-A2-A1FW | CDC42SE1|TNKS | CDC42SE1 | TNKS | 1 | 8 | -1 | 1 | 77 | 38 | 36 | 0.31 | 151031955 | 9619026 | tier1 | 5UTR-CDS | 3357 | NA | 0.37431 |
| BRCA | TCGA-LL-A440-01A | TCGA-LL-A440 | CDCA2|ADAM28 | CDCA2 | ADAM28 | 8 | 8 | 1 | 1 | 4 | 2 | 2 | 0.94 | 25361060 | 24167407 | tier1 | Out-of-frame | 3368 | NA | 0.35841 |
| BRCA | TCGA-AO-A12E-01A | TCGA-AO-A12E | CDH1|CCDC132 | CDH1 | CCDC132 | 16 | 7 | 1 | 1 | 243 | 305 | 279 | 2.2 | 68857529 | 92952923 | tier1 | In-frame | 3373 | NA | 0.37086 |
| BRCA | TCGA-B6-A0RN-01A | TCGA-B6-A0RN | CDH1|DEXI | CDH1 | DEXI | 16 | 16 | 1 | -1 | 59 | 121 | 112 | 0.27 | 68842751 | 11023416 | tier1 | CDS-3UTR | 3375 | NA | 0.37653 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | CDH1|NPFFR2 | CDH1 | NPFFR2 | 16 | 4 | 1 | 1 | 14 | 16 | 15 | 1.2 | 68772314 | 73003757 | tier1 | In-frame | 3376 | NA | 0.37792 |
| BRCA | TCGA-A2-A4S1-01A | TCGA-A2-A4S1 | CDH11|PRC1 | CDH11 | PRC1 | 16 | 15 | -1 | -1 | 206 | 155 | 135 | 1 | 65005482 | 91512853 | tier1 | Out-of-frame | 3379 | NA | 0.37112 |
| BRCA | TCGA-AC-A2QH-01B | TCGA-AC-A2QH | CDH2|KIAA1328 | CDH2 | KIAA1328 | 18 | 18 | -1 | 1 | 19 | 11 | 7 | 0.75 | 25727637 | 34646853 | tier1 | Out-of-frame | 3387 | NA | 0.37106 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | CDH23|NSD1 | CDH23 | NSD1 | 10 | 5 | 1 | 1 | 8 | 4 | 4 | 0.42 | 73501678 | 176618885 | tier1 | In-frame | 3389 | NA | 0.37712 |
| BRCA | TCGA-EW-A1PA-01A | TCGA-EW-A1PA | CDH4|NLRP9 | CDH4 | NLRP9 | 20 | 19 | 1 | -1 | 2 | 1 | 1 | 5 | 60348238 | 56244916 | tier2 | Out-of-frame | 3393 | NA | 0.35585 |
| BRCA | TCGA-AC-A62V-01A | TCGA-AC-A62V | CDH4|SLA2 | CDH4 | SLA2 | 20 | 20 | 1 | -1 | 4 | 7 | 5 | 0.027 | 60448956 | 35262992 | tier1 | Out-of-frame | 3394 | NA | 0.37426 |
| BRCA | TCGA-E2-A14N-01A | TCGA-E2-A14N | CDK5RAP2|ENG | CDK5RAP2 | ENG | 9 | 9 | -1 | -1 | 4 | 4 | 3 | 0.68 | 123280705 | 130588951 | tier1 | In-frame | 3429 | NA | 0.36793 |
| BRCA | TCGA-C8-A27A-01A | TCGA-C8-A27A | CDK5RAP3|RNF43 | CDK5RAP3 | RNF43 | 17 | 17 | 1 | -1 | 10 | 5 | 5 | 0.37 | 46051814 | 56448394 | tier1 | Out-of-frame | 3432 | NA | 0.35052 |
| BRCA | TCGA-B6-A0RS-01A | TCGA-B6-A0RS | CDKAL1|HSP90AA1 | CDKAL1 | HSP90AA1 | 6 | 14 | 1 | -1 | 2 | 1 | 1 | 0.034 | 20535625 | 102568422 | tier2 | 5UTR-CDS | 3451 | NA | 0.3735 |
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