Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 30 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-C8-A26V-01A | TCGA-C8-A26V | CADM2|FHIT | CADM2 | FHIT | 3 | 3 | 1 | -1 | 4 | 3 | 3 | 0.018 | 85851346 | 60522712 | tier1 | CDS-5UTR | 2885 | NA | 0.36219 |
| BRCA | TCGA-A8-A09D-01A | TCGA-A8-A09D | CAMK1D|TSPAN18 | CAMK1D | TSPAN18 | 10 | 11 | 1 | 1 | 11 | 5 | 5 | 0.35 | 12856306 | 44785976 | tier1 | CDS-5UTR | 2919 | NA | 0.36371 |
| BRCA | TCGA-C8-A12M-01A | TCGA-C8-A12M | CANT1|FBXL20 | CANT1 | FBXL20 | 17 | 17 | -1 | -1 | 4 | 7 | 7 | 0.11 | 77005746 | 37459892 | tier1 | 5UTR-CDS | 2949 | NA | 0.34003 |
| BRCA | TCGA-C8-A135-01A | TCGA-C8-A135 | CANT1|PSMD3 | CANT1 | PSMD3 | 17 | 17 | -1 | 1 | 61 | 44 | 40 | 0.27 | 77005746 | 38140547 | tier1 | 5UTR-CDS | 2951 | NA | 0.3479 |
| BRCA | TCGA-AR-A1AN-01A | TCGA-AR-A1AN | CAPZA2|MET | CAPZA2 | MET | 7 | 7 | 1 | 1 | 24 | 7 | 7 | 0.16 | 116550365 | 116409699 | tier1 | In-frame | 2981 | NA | 0.3779 |
| BRCA | TCGA-E2-A573-01A | TCGA-E2-A573 | CAPZB|SCEL | CAPZB | SCEL | 1 | 13 | -1 | 1 | 72 | 45 | 36 | 0.065 | 19670852 | 78208514 | tier1 | In-frame | 2986 | NA | 0.3567 |
| BRCA | TCGA-A1-A0SQ-01A | TCGA-A1-A0SQ | CCDC106|CD37 | CCDC106 | CD37 | 19 | 19 | 1 | 1 | 13 | 5 | 5 | 1.4 | 56160950 | 49838971 | tier2 | Out-of-frame | 3104 | NA | 0.36581 |
| BRCA | TCGA-AO-A12E-01A | TCGA-AO-A12E | CCDC132|CDH1 | CCDC132 | CDH1 | 7 | 16 | 1 | 1 | 26 | 15 | 15 | 2.2 | 92940584 | 68862077 | tier1 | In-frame | 3116 | NA | 0.37086 |
| BRCA | TCGA-C8-A12U-01A | TCGA-C8-A12U | CCDC138|GFRAL | CCDC138 | GFRAL | 2 | 6 | 1 | 1 | 2 | 2 | 2 | 0.56 | 109432561 | 55263978 | tier2 | Out-of-frame | 3119 | NA | 0.34594 |
| BRCA | TCGA-E2-A15F-01A | TCGA-E2-A15F | CCDC14|ADAM19 | CCDC14 | ADAM19 | 3 | 5 | -1 | -1 | 3 | 1 | 1 | 0.15 | 123667538 | 156991451 | tier3 | In-frame | 3120 | NA | 0.36614 |
| BRCA | TCGA-S3-A6ZF-01A | TCGA-S3-A6ZF | CCDC149|GABRB1 | CCDC149 | GABRB1 | 4 | 4 | -1 | 1 | 4 | 2 | 2 | 0.42 | 24914439 | 47033931 | tier1 | Out-of-frame | 3123 | NA | 0.3622 |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | CCDC6|ANK3 | CCDC6 | ANK3 | 10 | 10 | -1 | -1 | 49 | 34 | 32 | 0.072 | 61564178 | 61827767 | tier1 | In-frame | 3157 | NA | 0.37389 |
| BRCA | TCGA-EW-A1P4-01A | TCGA-EW-A1P4 | CCDC6|ANK3 | CCDC6 | ANK3 | 10 | 10 | -1 | -1 | 64 | 46 | 43 | 0.072 | 61574410 | 61789584 | tier1 | CDS-3UTR | 3158 | NA | 0.37389 |
| BRCA | TCGA-AR-A2LR-01A | TCGA-AR-A2LR | CCNY|AKAP10 | CCNY | AKAP10 | 10 | 17 | 1 | -1 | 6 | 9 | 5 | 0.55 | 35626135 | 19871774 | tier1 | In-frame | 3233 | NA | 0.36056 |
| BRCA | TCGA-AR-A256-01A | TCGA-AR-A256 | CCNY|DENND1A | CCNY | DENND1A | 10 | 9 | 1 | -1 | 35 | 18 | 11 | 0.2 | 35626135 | 126520101 | tier1 | Out-of-frame | 3237 | validated | 0.3478 |
| BRCA | TCGA-B6-A0I8-01A | TCGA-B6-A0I8 | CCNY|ZNF496 | CCNY | ZNF496 | 10 | 1 | 1 | -1 | 16 | 10 | 8 | 0.22 | 35790463 | 247473758 | tier1 | In-frame | 3241 | NA | 0.37194 |
| BRCA | TCGA-E9-A22B-01A | TCGA-E9-A22B | CCT2|CXCR5 | CCT2 | CXCR5 | 12 | 11 | 1 | 1 | 2 | 1 | 1 | 1.2 | 69995350 | 118754475 | tier3 | 3UTR-5UTR | 3246 | NA | 0.37331 |
| BRCA | TCGA-D8-A27M-01A | TCGA-D8-A27M | CD151|EFCAB4A | CD151 | EFCAB4A | 11 | 11 | 1 | 1 | 333 | 223 | 171 | 0.032 | 837354 | 831224 | tier1 | In-frame | 3260 | NA | 0.35713 |
| BRCA | TCGA-E2-A1LE-01A | TCGA-E2-A1LE | CD276|PARP16 | CD276 | PARP16 | 15 | 15 | 1 | -1 | 4 | 5 | 4 | 1.2 | 73976801 | 65563410 | tier1 | 5UTR-CDS | 3263 | NA | 0.33816 |
| BRCA | TCGA-AN-A0AT-01A | TCGA-AN-A0AT | CD302|ALPL | CD302 | ALPL | 2 | 1 | -1 | 1 | 18 | 10 | 8 | 0.34 | 160634449 | 21880471 | tier1 | CDS-5UTR | 3271 | validated | 0.347 |
|
Showing page 30 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.