Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-OL-A5D7-01A | TCGA-OL-A5D7 | C1orf9|ZCWPW2 | C1orf9 | ZCWPW2 | 1 | 3 | 1 | 1 | 4 | 2 | 2 | 1.3 | 172560211 | 28476601 | tier1 | Out-of-frame | 2622 | NA | 0 |
| BRCA | TCGA-E2-A1IH-01A | TCGA-E2-A1IH | C20orf177|SLC13A2 | C20orf177 | SLC13A2 | 20 | 17 | 1 | 1 | 2 | 3 | 3 | 1.7 | 58517567 | 26814428 | tier2 | 5UTR-5UTR | 2639 | NA | 0 |
| BRCA | TCGA-E2-A14Z-01A | TCGA-E2-A14Z | C20orf196|NCKAP1 | C20orf196 | NCKAP1 | 20 | 2 | 1 | -1 | 2 | 1 | 1 | 1 | 5753689 | 183868053 | tier3 | Out-of-frame | 2644 | NA | 0 |
| BRCA | TCGA-C8-A273-01A | TCGA-C8-A273 | C20orf43|PARD6B | C20orf43 | PARD6B | 20 | 20 | 1 | 1 | 7 | 10 | 9 | 0.077 | 55043822 | 49366196 | tier1 | Out-of-frame | 2648 | NA | 0 |
| BRCA | TCGA-A8-A09Q-01A | TCGA-A8-A09Q | C21orf63|CEP112 | C21orf63 | CEP112 | 21 | 17 | 1 | -1 | 3 | 3 | 2 | 0.87 | 33840156 | 63923807 | tier1 | Out-of-frame | 2660 | NA | 0 |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | C21orf63|MRAP | C21orf63 | MRAP | 21 | 21 | 1 | 1 | 19 | 24 | 20 | 0.86 | 33867480 | 33683995 | tier1 | Out-of-frame | 2661 | non-validated | 0 |
| BRCA | TCGA-A8-A091-01A | TCGA-A8-A091 | C2CD3|ABCA13 | C2CD3 | ABCA13 | 11 | 7 | -1 | 1 | 7 | 9 | 8 | 1.3 | 73843889 | 48520633 | tier1 | Out-of-frame | 2677 | NA | 0.3499 |
| BRCA | TCGA-A7-A4SB-01A | TCGA-A7-A4SB | C2CD3|ODZ4 | C2CD3 | ODZ4 | 11 | 11 | -1 | -1 | 19 | 8 | 8 | 0.086 | 73739332 | 78383374 | tier1 | In-frame | 2679 | NA | 0.3516 |
| BRCA | TCGA-E2-A109-01A | TCGA-E2-A109 | C2CD3|P2RY6 | C2CD3 | P2RY6 | 11 | 11 | -1 | 1 | 14 | 11 | 9 | 0.051 | 73829273 | 73007530 | tier1 | CDS-5UTR | 2680 | validated | 0.35488 |
| BRCA | TCGA-D8-A27M-01A | TCGA-D8-A27M | C2orf67|ERBB4 | C2orf67 | ERBB4 | 2 | 2 | -1 | -1 | 3 | 1 | 1 | 0.19 | 210993755 | 212495319 | tier2 | Out-of-frame | 2692 | NA | 0 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | C7orf46|MUC4 | C7orf46 | MUC4 | 7 | 3 | 1 | -1 | 2 | 3 | 3 | 3.1 | 23729078 | 195481243 | tier4 | Out-of-frame | 2792 | NA | 0 |
| BRCA | TCGA-AO-A0J4-01A | TCGA-AO-A0J4 | C8orf76|NKAIN3 | C8orf76 | NKAIN3 | 8 | 8 | -1 | 1 | 5 | 5 | 3 | 1.1 | 124238740 | 63492098 | tier4 | In-frame | 2810 | non-validated | 0 |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | C9orf5|C9orf4 | C9orf5 | C9orf4 | 9 | 9 | -1 | -1 | 27 | 24 | 23 | 0.13 | 111868788 | 111912000 | tier1 | In-frame | 2828 | NA | 0 |
| BRCA | TCGA-BH-A1FC-01A | TCGA-BH-A1FC | CACHD1|CLIC4 | CACHD1 | CLIC4 | 1 | 1 | 1 | 1 | 10 | 9 | 7 | 0.82 | 64936625 | 25124233 | tier2 | In-frame | 2849 | validated | 0.36113 |
| BRCA | TCGA-BH-A1FE-01A | TCGA-BH-A1FE | CACNA1A|ZNF44 | CACNA1A | ZNF44 | 19 | 19 | -1 | -1 | 6 | 2 | 1 | 1 | 13394081 | 12359493 | tier2 | CDS-3UTR | 2852 | NA | 0.3747 |
| BRCA | TCGA-AN-A0FX-01A | TCGA-AN-A0FX | CACNA1C|WNT5B | CACNA1C | WNT5B | 12 | 12 | 1 | 1 | 20 | 10 | 9 | 1.1 | 2229596 | 1740464 | tier1 | CDS-5UTR | 2860 | NA | 0.36676 |
| BRCA | TCGA-GM-A2DD-01A | TCGA-GM-A2DD | CACNA1D|PRKCD | CACNA1D | PRKCD | 3 | 3 | 1 | 1 | 3 | 2 | 2 | 0.22 | 53535747 | 53217468 | tier1 | In-frame | 2863 | NA | 0.38597 |
| BRCA | TCGA-D8-A1JM-01A | TCGA-D8-A1JM | CACNA1I|TAB1 | CACNA1I | TAB1 | 22 | 22 | 1 | 1 | 8 | 8 | 8 | 0.027 | 40058440 | 39822708 | tier1 | In-frame | 2866 | NA | 0.34422 |
| BRCA | TCGA-A2-A0EY-01A | TCGA-A2-A0EY | CACNG4|C17orf51 | CACNG4 | C17orf51 | 17 | 17 | 1 | -1 | 3 | 1 | 1 | 0.023 | 64961247 | 21438799 | tier2 | In-frame | 2880 | validated | 0 |
| BRCA | TCGA-C8-A12M-01A | TCGA-C8-A12M | CACNG4|VMP1 | CACNG4 | VMP1 | 17 | 17 | 1 | 1 | 9 | 6 | 5 | 0.91 | 64961247 | 57812699 | tier1 | In-frame | 2882 | NA | 0.33756 |
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