Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AC-A6IW-01A | TCGA-AC-A6IW | BRWD1|ABCA10 | BRWD1 | ABCA10 | 21 | 17 | -1 | -1 | 2 | 3 | 2 | 0.24 | 40619627 | 67184020 | tier2 | Out-of-frame | 2231 | NA | 0.36755 |
| BRCA | TCGA-E9-A1NF-01A | TCGA-E9-A1NF | BRWD1|ABCG1 | BRWD1 | ABCG1 | 21 | 21 | -1 | 1 | 4 | 2 | 2 | 0.46 | 40665737 | 43645781 | tier1 | In-frame | 2232 | NA | 0.3695 |
| BRCA | TCGA-D8-A13Z-01A | TCGA-D8-A13Z | BTN2A1|HIST1H2AC | BTN2A1 | HIST1H2AC | 6 | 6 | 1 | 1 | 88 | 35 | 32 | 2.2 | 26466316 | 26138282 | tier1 | CDS-3UTR | 2279 | NA | 0.35172 |
| BRCA | TCGA-E2-A109-01A | TCGA-E2-A109 | BTN3A2|HIST1H2AC | BTN3A2 | HIST1H2AC | 6 | 6 | 1 | 1 | 9 | 5 | 5 | 0.17 | 26375026 | 26138282 | tier1 | 3UTR-3UTR | 2281 | non-validated | 0.35069 |
| BRCA | TCGA-BH-A18U-01A | TCGA-BH-A18U | BTRC|CDH23 | BTRC | CDH23 | 10 | 10 | 1 | 1 | 2 | 1 | 1 | 0.2 | 103113985 | 73269839 | tier2 | Out-of-frame | 2282 | non-validated | 0.38513 |
| BRCA | TCGA-AC-A8OQ-01A | TCGA-AC-A8OQ | C10orf18|ABI1 | C10orf18 | ABI1 | 10 | 10 | 1 | -1 | 8 | 18 | 18 | 0.094 | 5727138 | 27112234 | tier1 | 5UTR-CDS | 2309 | NA | 0 |
| BRCA | TCGA-AO-A1KT-01A | TCGA-AO-A1KT | C10orf26|ADAMTS2 | C10orf26 | ADAMTS2 | 10 | 5 | 1 | -1 | 6 | 5 | 5 | 0.28 | 104503900 | 178700065 | tier1 | In-frame | 2314 | NA | 0 |
| BRCA | TCGA-A8-A091-01A | TCGA-A8-A091 | C11orf30|BBS9 | C11orf30 | BBS9 | 11 | 7 | 1 | 1 | 5 | 5 | 4 | 0.98 | 76207513 | 33195250 | tier1 | Out-of-frame | 2377 | NA | 0 |
| BRCA | TCGA-LD-A7W6-01A | TCGA-LD-A7W6 | C11orf30|LRP5 | C11orf30 | LRP5 | 11 | 11 | 1 | 1 | 17 | 16 | 13 | 100 | 76175124 | 68153784 | tier1 | Out-of-frame | 2379 | NA | 0 |
| BRCA | TCGA-BH-A18T-01A | TCGA-BH-A18T | C11orf80|BBS1 | C11orf80 | BBS1 | 11 | 11 | 1 | 1 | 13 | 11 | 11 | 0.99 | 66526567 | 66294120 | tier1 | In-frame | 2398 | NA | 0 |
| BRCA | TCGA-A8-A0AD-01A | TCGA-A8-A0AD | C16orf45|POMT2 | C16orf45 | POMT2 | 16 | 14 | 1 | -1 | 10 | 11 | 9 | 1.3 | 15528616 | 77772784 | tier1 | Out-of-frame | 2478 | NA | 0 |
| BRCA | TCGA-AO-A126-01A | TCGA-AO-A126 | C16orf45|RHBDL2 | C16orf45 | RHBDL2 | 16 | 1 | 1 | -1 | 3 | 7 | 5 | 0.59 | 15528616 | 39385009 | tier1 | CDS-5UTR | 2479 | NA | 0 |
| BRCA | TCGA-B6-A0RS-01A | TCGA-B6-A0RS | C16orf55|DPEP1 | C16orf55 | DPEP1 | 16 | 16 | 1 | 1 | 4 | 4 | 4 | 0.14 | 89724829 | 89696713 | tier1 | CDS-5UTR | 2482 | NA | 0 |
| BRCA | TCGA-A2-A3XX-01A | TCGA-A2-A3XX | C19orf2|IL29 | C19orf2 | IL29 | 19 | 19 | 1 | 1 | 20 | 11 | 11 | 0.93 | 30462134 | 39787445 | tier4 | 5UTR-CDS | 2554 | non-validated | 0 |
| BRCA | TCGA-E9-A1RF-01A | TCGA-E9-A1RF | C19orf55|IGFLR1 | C19orf55 | IGFLR1 | 19 | 19 | 1 | -1 | 13 | 3 | 2 | 0.31 | 36250892 | 36230527 | tier1 | Out-of-frame | 2579 | NA | 0 |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | C19orf6|CCDC25 | C19orf6 | CCDC25 | 19 | 8 | -1 | -1 | 11 | 5 | 4 | 0.35 | 1020771 | 27610104 | tier1 | In-frame | 2580 | NA | 0 |
| BRCA | TCGA-AR-A1AT-01A | TCGA-AR-A1AT | C1orf132|GRIK3 | C1orf132 | GRIK3 | 1 | 1 | -1 | -1 | 15 | 12 | 11 | 0.65 | 208041271 | 37356697 | tier1 | NA | 2587 | NA | 0 |
| BRCA | TCGA-A2-A0T2-01A | TCGA-A2-A0T2 | C1orf9|C1orf105 | C1orf9 | C1orf105 | 1 | 1 | 1 | 1 | 14 | 4 | 4 | 0.72 | 172502637 | 172425555 | tier1 | Out-of-frame | 2611 | NA | 0 |
| BRCA | TCGA-C8-A278-01A | TCGA-C8-A278 | C1orf9|DARS2 | C1orf9 | DARS2 | 1 | 1 | 1 | 1 | 4 | 3 | 2 | 2.6 | 172539870 | 173814367 | tier1 | Out-of-frame | 2614 | NA | 0 |
| BRCA | TCGA-A8-A07U-01A | TCGA-A8-A07U | C1orf9|DNM3 | C1orf9 | DNM3 | 1 | 1 | 1 | 1 | 40 | 28 | 28 | 0.46 | 172560211 | 172348158 | tier1 | In-frame | 2616 | NA | 0 |
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