Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-C8-A1HI-01A | TCGA-C8-A1HI | ATP8B4|ATPBD4 | ATP8B4 | ATPBD4 | 15 | 15 | -1 | -1 | 2 | 4 | 4 | 0.48 | 50330965 | 35674117 | tier3 | Out-of-frame | 1771 | NA | 0.34997 |
| BRCA | TCGA-A2-A1FW-01A | TCGA-A2-A1FW | ATRN|RNF24 | ATRN | RNF24 | 20 | 20 | 1 | -1 | 48 | 41 | 39 | 1 | 3557644 | 3915720 | tier1 | Out-of-frame | 1787 | NA | 0.35644 |
| BRCA | TCGA-BH-A28Q-01A | TCGA-BH-A28Q | AZGP1|FAR1 | AZGP1 | FAR1 | 7 | 11 | -1 | 1 | 2 | 6 | 3 | 1.5 | 99564354 | 13744912 | tier4 | NA | 1840 | NA | 0.36109 |
| BRCA | TCGA-E9-A5UO-01A | TCGA-E9-A5UO | AZGP1|TYK2 | AZGP1 | TYK2 | 7 | 19 | -1 | -1 | 2 | 25 | 16 | 1.1 | 99564354 | 10491352 | tier3 | NA | 1841 | NA | 0.37842 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | B4GALNT3|SLCO4A1 | B4GALNT3 | SLCO4A1 | 12 | 20 | 1 | 1 | 5 | 4 | 4 | 0.14 | 666032 | 61290029 | tier1 | In-frame | 1864 | NA | 0.34088 |
| BRCA | TCGA-LL-A9Q3-01A | TCGA-LL-A9Q3 | B4GALT1|AQP7 | B4GALT1 | AQP7 | 9 | 9 | -1 | -1 | 2 | 1 | 1 | 0.071 | 33166756 | 33386539 | tier4 | In-frame | 1865 | NA | 0.36108 |
| BRCA | TCGA-A7-A2KD-01A | TCGA-A7-A2KD | B4GALT1|FAM201A | B4GALT1 | FAM201A | 9 | 9 | -1 | 1 | 39 | 6 | 4 | 0.012 | 33135187 | 38621829 | tier1 | Out-of-frame | 1870 | NA | 0.35882 |
| BRCA | TCGA-AO-A0JD-01A | TCGA-AO-A0JD | B4GALT1|NFX1 | B4GALT1 | NFX1 | 9 | 9 | -1 | 1 | 39 | 12 | 12 | 2.4 | 33135187 | 33354084 | tier1 | Out-of-frame | 1872 | NA | 0.37285 |
| BRCA | TCGA-BH-A0H9-01A | TCGA-BH-A0H9 | B4GALT5|GNAS | B4GALT5 | GNAS | 20 | 20 | -1 | 1 | 65 | 119 | 114 | 0.62 | 48330113 | 57470667 | tier1 | In-frame | 1878 | NA | 0.37233 |
| BRCA | TCGA-BH-A0AV-01A | TCGA-BH-A0AV | BAI2|SPOCD1 | BAI2 | SPOCD1 | 1 | 1 | -1 | -1 | 3 | 2 | 2 | 0.063 | 32221600 | 32259836 | tier1 | Out-of-frame | 1913 | validated | 0.37198 |
| BRCA | TCGA-EW-A1OX-01A | TCGA-EW-A1OX | BCAS3|ABCA8 | BCAS3 | ABCA8 | 17 | 17 | 1 | -1 | 42 | 26 | 19 | 0.74 | 58885437 | 66865920 | tier1 | In-frame | 1972 | NA | 0.34759 |
| BRCA | TCGA-AR-A0TQ-01A | TCGA-AR-A0TQ | BCAS3|CYTH1 | BCAS3 | CYTH1 | 17 | 17 | 1 | -1 | 10 | 7 | 7 | 0.43 | 59001861 | 76705814 | tier1 | In-frame | 1977 | NA | 0.36976 |
| BRCA | TCGA-AN-A0XW-01A | TCGA-AN-A0XW | BCAS3|GRIK2 | BCAS3 | GRIK2 | 17 | 6 | 1 | 1 | 3 | 2 | 2 | 0.63 | 59001861 | 102069824 | tier1 | In-frame | 1981 | NA | 0.363 |
| BRCA | TCGA-LL-A7SZ-01A | TCGA-LL-A7SZ | BIRC6|ABCC11 | BIRC6 | ABCC11 | 2 | 16 | 1 | -1 | 5 | 6 | 6 | 2.7 | 32738221 | 48211024 | tier1 | Out-of-frame | 2106 | NA | 0.36907 |
| BRCA | TCGA-S3-A6ZF-01A | TCGA-S3-A6ZF | BLNK|PIK3AP1 | BLNK | PIK3AP1 | 10 | 10 | -1 | -1 | 8 | 12 | 12 | 0.3 | 97976409 | 98388250 | tier1 | In-frame | 2121 | NA | 0.37557 |
| BRCA | TCGA-A8-A08I-01A | TCGA-A8-A08I | BLNK|ZNF536 | BLNK | ZNF536 | 10 | 19 | -1 | 1 | 11 | 4 | 3 | 3.8 | 98002491 | 31025754 | tier1 | In-frame | 2122 | NA | 0.37813 |
| BRCA | TCGA-A2-A0ET-01A | TCGA-A2-A0ET | BMPR1B|MCC | BMPR1B | MCC | 4 | 5 | 1 | -1 | 12 | 10 | 9 | 0.13 | 95917285 | 112406931 | tier1 | 5UTR-CDS | 2136 | NA | 0.38318 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | BPTF|ABCC3 | BPTF | ABCC3 | 17 | 17 | 1 | 1 | 8 | 6 | 6 | 2.1 | 65850878 | 48733193 | tier1 | Out-of-frame | 2157 | NA | 0.36311 |
| BRCA | TCGA-3C-AALI-01A | TCGA-3C-AALI | BPTF|PLXDC1 | BPTF | PLXDC1 | 17 | 17 | 1 | -1 | 7 | 10 | 7 | 0.059 | 65962772 | 37243955 | tier1 | In-frame | 2170 | NA | 0.36106 |
| BRCA | TCGA-E2-A1B0-01A | TCGA-E2-A1B0 | BRPF3|HLA-DMA | BRPF3 | HLA-DMA | 6 | 6 | 1 | -1 | 4 | 6 | 6 | 2.9 | 36172591 | 32918580 | tier1 | Out-of-frame | 2227 | NA | 0.36991 |
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