Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-S3-A6ZG-01A | TCGA-S3-A6ZG | ARRB1|PICALM | ARRB1 | PICALM | 11 | 11 | -1 | -1 | 18 | 9 | 9 | 5.2 | 75062632 | 85726006 | tier1 | In-frame | 1457 | NA | 0.37487 |
| BRCA | TCGA-B6-A0X1-01A | TCGA-B6-A0X1 | ASAP1|KCNH1 | ASAP1 | KCNH1 | 8 | 1 | -1 | -1 | 6 | 7 | 7 | 0.67 | 131088594 | 210977508 | tier1 | In-frame | 1480 | NA | 0.37891 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | ASCC3|GRIK2 | ASCC3 | GRIK2 | 6 | 6 | -1 | 1 | 3 | 2 | 2 | 0.41 | 101214441 | 102192474 | tier1 | In-frame | 1508 | NA | 0.36881 |
| BRCA | TCGA-A2-A3KD-01A | TCGA-A2-A3KD | ASPH|RSF1 | ASPH | RSF1 | 8 | 11 | -1 | -1 | 11 | 13 | 13 | 0.18 | 62430087 | 77413540 | tier1 | Out-of-frame | 1542 | NA | 0.36108 |
| BRCA | TCGA-A8-A0A4-01A | TCGA-A8-A0A4 | ASS1|NCS1 | ASS1 | NCS1 | 9 | 9 | 1 | 1 | 14 | 18 | 16 | 1.2 | 133355836 | 132963237 | tier2 | In-frame | 1545 | NA | 0.35553 |
| BRCA | TCGA-A2-A0EW-01A | TCGA-A2-A0EW | ASTN2|C9orf29 | ASTN2 | C9orf29 | 9 | 9 | -1 | -1 | 10 | 12 | 10 | 2.3 | 119802098 | 114365393 | tier1 | Out-of-frame | 1547 | NA | 0 |
| BRCA | TCGA-B6-A0I9-01A | TCGA-B6-A0I9 | ASTN2|PNMT | ASTN2 | PNMT | 9 | 17 | -1 | 1 | 90 | 38 | 37 | 0.056 | 120053605 | 37825882 | tier1 | Out-of-frame | 1549 | NA | 0.33857 |
| BRCA | TCGA-A7-A13D-01B | TCGA-A7-A13D | ASXL1|TM9SF4 | ASXL1 | TM9SF4 | 20 | 20 | 1 | 1 | 9 | 3 | 3 | 0.083 | 30956926 | 30720816 | tier1 | CDS-5UTR | 1556 | validated | 0.34223 |
| BRCA | TCGA-E9-A243-01A | TCGA-E9-A243 | ATAD2|PODXL | ATAD2 | PODXL | 8 | 7 | -1 | -1 | 26 | 18 | 16 | 0.34 | 124351551 | 131196192 | tier1 | In-frame | 1579 | NA | 0.36348 |
| BRCA | TCGA-A8-A09D-01A | TCGA-A8-A09D | ATG13|TSPAN18 | ATG13 | TSPAN18 | 11 | 11 | 1 | 1 | 76 | 43 | 42 | 0.71 | 46639440 | 44881879 | tier1 | 5UTR-5UTR | 1616 | NA | 0.32914 |
| BRCA | TCGA-D8-A143-01A | TCGA-D8-A143 | ATP11A|TUBGCP3 | ATP11A | TUBGCP3 | 13 | 13 | 1 | -1 | 3 | 3 | 3 | 0.35 | 113490565 | 113209319 | tier1 | In-frame | 1673 | NA | 0.35874 |
| BRCA | TCGA-E2-A1II-01A | TCGA-E2-A1II | ATP11C|PREX1 | ATP11C | PREX1 | X | 20 | -1 | -1 | 3 | 4 | 3 | 0.48 | 139014175 | 47309328 | tier1 | Out-of-frame | 1686 | NA | 0.3573 |
| BRCA | TCGA-A2-A0ST-01A | TCGA-A2-A0ST | ATP1A1|NOTCH2 | ATP1A1 | NOTCH2 | 1 | 1 | 1 | -1 | 19 | 12 | 9 | 5.3 | 116926746 | 120465401 | tier1 | Out-of-frame | 1693 | NA | 0.39004 |
| BRCA | TCGA-AR-A1AM-01A | TCGA-AR-A1AM | ATP1A1|RABEP1 | ATP1A1 | RABEP1 | 1 | 17 | 1 | 1 | 2 | 11 | 11 | 0.72 | 116947394 | 5283828 | tier4 | NA | 1694 | NA | 0.37007 |
| BRCA | TCGA-E2-A15A-01A | TCGA-E2-A15A | ATP1A1|VANGL1 | ATP1A1 | VANGL1 | 1 | 1 | 1 | 1 | 10 | 10 | 9 | 4.1 | 116916145 | 116206282 | tier1 | In-frame | 1695 | NA | 0.36493 |
| BRCA | TCGA-A2-A0CZ-01A | TCGA-A2-A0CZ | ATP2B1|IKBIP | ATP2B1 | IKBIP | 12 | 12 | -1 | -1 | 3 | 2 | 1 | 0.066 | 90024282 | 99028191 | tier3 | Out-of-frame | 1718 | NA | 0.36363 |
| BRCA | TCGA-E9-A5UO-01A | TCGA-E9-A5UO | ATP2B1|KCNC2 | ATP2B1 | KCNC2 | 12 | 12 | -1 | -1 | 22 | 13 | 12 | 0.12 | 90004970 | 75442097 | tier1 | Out-of-frame | 1719 | NA | 0.36773 |
| BRCA | TCGA-B6-A0I1-01A | TCGA-B6-A0I1 | ATP6V0A1|ATF6 | ATP6V0A1 | ATF6 | 17 | 1 | 1 | 1 | 9 | 6 | 6 | 0.091 | 40613029 | 161832988 | tier1 | Out-of-frame | 1745 | non-validated | 0.37087 |
| BRCA | TCGA-EW-A1J1-01A | TCGA-EW-A1J1 | ATP6V0A1|MSI2 | ATP6V0A1 | MSI2 | 17 | 17 | 1 | 1 | 34 | 35 | 32 | 0.026 | 40635149 | 55607037 | tier1 | In-frame | 1747 | NA | 0.34895 |
| BRCA | TCGA-AC-A3OD-01B | TCGA-AC-A3OD | ATP6V1H|ST8SIA4 | ATP6V1H | ST8SIA4 | 8 | 5 | -1 | -1 | 3 | 1 | 1 | 1.1 | 54723724 | 100231489 | tier2 | Out-of-frame | 1763 | NA | 0.35135 |
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