Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-OL-A5D6-01A | TCGA-OL-A5D6 | APOD|CLDN7 | APOD | CLDN7 | 3 | 17 | -1 | -1 | 2 | 3 | 3 | 0.97 | 195295573 | 7166264 | tier3 | 3UTR-5UTR | 1138 | NA | 0.35594 |
| BRCA | TCGA-A8-A08P-01A | TCGA-A8-A08P | APP|RCAN1 | APP | RCAN1 | 21 | 21 | -1 | -1 | 32 | 85 | 75 | 1.3 | 27484296 | 35896008 | tier1 | In-frame | 1151 | NA | 0.38188 |
| BRCA | TCGA-A2-A3XY-01A | TCGA-A2-A3XY | AQP1|TYK2 | AQP1 | TYK2 | 7 | 19 | 1 | -1 | 2 | 17 | 15 | 0.12 | 30965131 | 10491352 | tier3 | 3UTR-5UTR | 1168 | NA | 0.37662 |
| BRCA | TCGA-AN-A03Y-01A | TCGA-AN-A03Y | ARAP1|MOGAT2 | ARAP1 | MOGAT2 | 11 | 11 | -1 | 1 | 23 | 10 | 10 | 0.66 | 72410050 | 75431037 | tier1 | Out-of-frame | 1174 | NA | 0.37884 |
| BRCA | TCGA-AR-A24L-01A | TCGA-AR-A24L | ARAP1|RP11-831H9.11 | ARAP1 | RP11-831H9.11 | 11 | 11 | -1 | -1 | 15 | 21 | 21 | 1.4 | 72463373 | 62417471 | tier1 | 5UTR-CDS | 1175 | NA | 0.37769 |
| BRCA | TCGA-A1-A0SM-01A | TCGA-A1-A0SM | ARAP1|USP35 | ARAP1 | USP35 | 11 | 11 | -1 | 1 | 2 | 1 | 1 | 0.25 | 72443560 | 77907282 | tier2 | 5UTR-5UTR | 1177 | non-validated | 0.38081 |
| BRCA | TCGA-A8-A08J-01A | TCGA-A8-A08J | ARHGAP10|TMEM184C | ARHGAP10 | TMEM184C | 4 | 4 | 1 | 1 | 4 | 6 | 6 | 0.49 | 148653606 | 148593018 | tier1 | Out-of-frame | 1208 | NA | 0.37086 |
| BRCA | TCGA-A8-A06Z-01A | TCGA-A8-A06Z | ARHGAP32|AHNAK | ARHGAP32 | AHNAK | 11 | 11 | -1 | -1 | 21 | 9 | 8 | 1.9 | 128993341 | 62201363 | tier1 | Out-of-frame | 1244 | NA | 0.36315 |
| BRCA | TCGA-AO-A0J5-01A | TCGA-AO-A0J5 | ARHGAP32|FCHSD2 | ARHGAP32 | FCHSD2 | 11 | 11 | -1 | -1 | 9 | 8 | 8 | 0.46 | 129034214 | 72794785 | tier1 | CDS-5UTR | 1247 | NA | 0.36246 |
| BRCA | TCGA-BH-A1F6-01A | TCGA-BH-A1F6 | ARID1B|SNX9 | ARID1B | SNX9 | 6 | 6 | 1 | 1 | 37 | 14 | 12 | 1.2 | 157150555 | 158288579 | tier1 | In-frame | 1359 | NA | 0.38015 |
| BRCA | TCGA-B6-A0RH-01A | TCGA-B6-A0RH | ARID2|TMPRSS2 | ARID2 | TMPRSS2 | 12 | 21 | 1 | -1 | 36 | 21 | 20 | 3.5 | 46233279 | 42902145 | tier2 | NA | 1369 | NA | 0.36354 |
| BRCA | TCGA-BH-A0AU-01A | TCGA-BH-A0AU | ARID3A|PMEPA1 | ARID3A | PMEPA1 | 19 | 20 | 1 | -1 | 16 | 8 | 8 | 0.14 | 968503 | 56234753 | tier1 | In-frame | 1372 | NA | 0.36894 |
| BRCA | TCGA-OL-A5D8-01A | TCGA-OL-A5D8 | ARID4B|PCNXL2 | ARID4B | PCNXL2 | 1 | 1 | -1 | -1 | 77 | 74 | 71 | 0.035 | 235420475 | 233314921 | tier1 | In-frame | 1383 | NA | 0.35671 |
| BRCA | TCGA-C8-A134-01A | TCGA-C8-A134 | ARL15|CDC42SE2 | ARL15 | CDC42SE2 | 5 | 5 | -1 | 1 | 2 | 2 | 1 | 1.3 | 53409032 | 130721236 | tier3 | CDS-5UTR | 1395 | NA | 0.36949 |
| BRCA | TCGA-EW-A1J2-01A | TCGA-EW-A1J2 | ARNT2|PDLIM5 | ARNT2 | PDLIM5 | 15 | 4 | 1 | 1 | 18 | 22 | 19 | 1.4 | 80696888 | 95539155 | tier1 | Out-of-frame | 1432 | NA | 0.38177 |
| BRCA | TCGA-E9-A1RH-01A | TCGA-E9-A1RH | ARPC4-TTLL3|GRM7 | ARPC4-TTLL3 | GRM7 | 3 | 3 | 1 | 1 | 60 | 15 | 15 | 0.37 | 9845697 | 7188139 | tier1 | NA | 1443 | NA | 0.36693 |
| BRCA | TCGA-A2-A3KC-01A | TCGA-A2-A3KC | ARRB1|GAB2 | ARRB1 | GAB2 | 11 | 11 | -1 | -1 | 8 | 7 | 7 | 0.017 | 75062632 | 77991947 | tier1 | Out-of-frame | 1447 | non-validated | 0.39085 |
| BRCA | TCGA-A7-A6VV-01A | TCGA-A7-A6VV | ARRB1|GDPD5 | ARRB1 | GDPD5 | 11 | 11 | -1 | -1 | 18 | 11 | 11 | 0.14 | 75062632 | 75201365 | tier1 | CDS-5UTR | 1448 | NA | 0.37652 |
| BRCA | TCGA-B6-A3ZX-01A | TCGA-B6-A3ZX | ARRB1|GDPD5 | ARRB1 | GDPD5 | 11 | 11 | -1 | -1 | 5 | 6 | 6 | 0.14 | 75062632 | 75201365 | tier1 | CDS-5UTR | 1449 | NA | 0.37652 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | ARRB1|PAK1 | ARRB1 | PAK1 | 11 | 11 | -1 | -1 | 5 | 1 | 1 | 1.5 | 75062632 | 77103586 | tier3 | CDS-5UTR | 1455 | NA | 0.38411 |
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