Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-E9-A1N6-01A | TCGA-E9-A1N6 | ANK3|ATAD1 | ANK3 | ATAD1 | 10 | 10 | -1 | -1 | 2 | 7 | 7 | 0.2 | 62374944 | 89574369 | tier2 | CDS-5UTR | 903 | NA | 0.37162 |
| BRCA | TCGA-A2-A0CL-01A | TCGA-A2-A0CL | ANK3|CDK1 | ANK3 | CDK1 | 10 | 10 | -1 | 1 | 11 | 11 | 11 | 0.29 | 61894029 | 62539899 | tier1 | CDS-5UTR | 904 | NA | 0.36802 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | ANK3|CHN2 | ANK3 | CHN2 | 10 | 7 | -1 | 1 | 22 | 18 | 18 | 1.9 | 62021617 | 29433295 | tier1 | In-frame | 905 | NA | 0.38275 |
| BRCA | TCGA-AR-A0TT-01A | TCGA-AR-A0TT | ANK3|IFIT5 | ANK3 | IFIT5 | 10 | 10 | -1 | 1 | 2 | 1 | 1 | 0.17 | 62493021 | 91176962 | tier3 | Out-of-frame | 906 | NA | 0.3704 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | ANK3|RHOBTB1 | ANK3 | RHOBTB1 | 10 | 10 | -1 | -1 | 3 | 2 | 2 | 0.68 | 62493021 | 62671310 | tier1 | CDS-5UTR | 908 | non-validated | 0.37708 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | ANK3|SP2 | ANK3 | SP2 | 10 | 17 | -1 | 1 | 6 | 1 | 1 | 0.47 | 62374944 | 45992678 | tier2 | Out-of-frame | 909 | NA | 0.37799 |
| BRCA | TCGA-AO-A12D-01A | TCGA-AO-A12D | ANK3|TMPRSS15 | ANK3 | TMPRSS15 | 10 | 21 | -1 | -1 | 2 | 1 | 1 | 0.049 | 61894029 | 19687573 | tier2 | Out-of-frame | 910 | NA | 0.36802 |
| BRCA | TCGA-E2-A10C-01A | TCGA-E2-A10C | ANK3|WDFY4 | ANK3 | WDFY4 | 10 | 10 | -1 | 1 | 3 | 7 | 6 | 0.43 | 61905726 | 49917761 | tier1 | CDS-5UTR | 912 | NA | 0.37122 |
| BRCA | TCGA-GM-A3XL-01A | TCGA-GM-A3XL | ANKRD11|LINGO1 | ANKRD11 | LINGO1 | 16 | 15 | -1 | -1 | 22 | 15 | 14 | 0.28 | 89484692 | 77908242 | tier1 | 5UTR-CDS | 953 | non-validated | 0.38057 |
| BRCA | TCGA-BH-A0B6-01A | TCGA-BH-A0B6 | ANKS1B|NDUFA12 | ANKS1B | NDUFA12 | 12 | 12 | -1 | -1 | 8 | 8 | 8 | 0.3 | 100048845 | 95365396 | tier1 | Out-of-frame | 1005 | NA | 0.37536 |
| BRCA | TCGA-C8-A138-01A | TCGA-C8-A138 | ANO1|ABCC11 | ANO1 | ABCC11 | 11 | 16 | 1 | -1 | 4 | 1 | 1 | 0.24 | 69972301 | 48211024 | tier2 | Out-of-frame | 1017 | NA | 0.34678 |
| BRCA | TCGA-C8-A1HK-01A | TCGA-C8-A1HK | ANO1|ABHD15 | ANO1 | ABHD15 | 11 | 17 | 1 | -1 | 37 | 40 | 36 | 0.16 | 70028792 | 27890104 | tier1 | In-frame | 1018 | NA | 0.33747 |
| BRCA | TCGA-A8-A097-01A | TCGA-A8-A097 | ANO1|CYP2R1 | ANO1 | CYP2R1 | 11 | 11 | 1 | -1 | 6 | 5 | 5 | 1 | 69924820 | 14907463 | tier1 | In-frame | 1021 | NA | 0.34532 |
| BRCA | TCGA-E9-A228-01A | TCGA-E9-A228 | ANO1|UNC5D | ANO1 | UNC5D | 11 | 8 | 1 | 1 | 14 | 20 | 17 | 5.2 | 70017145 | 35406810 | tier1 | In-frame | 1026 | NA | 0.35621 |
| BRCA | TCGA-E2-A1L8-01A | TCGA-E2-A1L8 | ANO6|IAPP | ANO6 | IAPP | 12 | 12 | 1 | 1 | 107 | 94 | 90 | 0.12 | 45816845 | 21531171 | tier1 | Out-of-frame | 1035 | NA | 0.35348 |
| BRCA | TCGA-B6-A0X1-01A | TCGA-B6-A0X1 | ANO9|DEAF1 | ANO9 | DEAF1 | 11 | 11 | -1 | -1 | 7 | 4 | 2 | 0.79 | 428088 | 654051 | tier1 | Out-of-frame | 1040 | NA | 0.35942 |
| BRCA | TCGA-AC-A5EH-01A | TCGA-AC-A5EH | AP1M1|RAB8A | AP1M1 | RAB8A | 19 | 19 | 1 | 1 | 15 | 15 | 15 | 0.18 | 16319988 | 16236280 | tier1 | In-frame | 1066 | NA | 0.37893 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | APBA2|GABRB3 | APBA2 | GABRB3 | 15 | 15 | 1 | -1 | 5 | 4 | 4 | 2.7 | 29288009 | 26828561 | tier1 | 5UTR-CDS | 1101 | non-validated | 0.37274 |
| BRCA | TCGA-A2-A0T0-01A | TCGA-A2-A0T0 | APBB2|DMD | APBB2 | DMD | 4 | X | -1 | -1 | 5 | 1 | 1 | 0.37 | 40823888 | 31525570 | tier2 | In-frame | 1106 | NA | 0.37554 |
| BRCA | TCGA-AN-A0FS-01A | TCGA-AN-A0FS | APLP2|KCNJ5 | APLP2 | KCNJ5 | 11 | 11 | 1 | 1 | 13 | 27 | 21 | 0.79 | 129939977 | 128781159 | tier1 | CDS-5UTR | 1128 | NA | 0.37273 |
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