Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-B6-A0IK-01A | TCGA-B6-A0IK | ADIPOR2|WNT5B | ADIPOR2 | WNT5B | 12 | 12 | 1 | 1 | 7 | 2 | 2 | 0.094 | 1800357 | 1740464 | tier1 | 5UTR-5UTR | 512 | NA | 0.34983 |
| BRCA | TCGA-AN-A0AJ-01A | TCGA-AN-A0AJ | ADK|KCNMA1 | ADK | KCNMA1 | 10 | 10 | 1 | -1 | 8 | 12 | 12 | 1.8 | 76074503 | 79011014 | tier1 | In-frame | 516 | NA | 0.36559 |
| BRCA | TCGA-BH-A18U-01A | TCGA-BH-A18U | ADK|LRRTM3 | ADK | LRRTM3 | 10 | 10 | 1 | 1 | 11 | 2 | 2 | 0.91 | 76430027 | 68857345 | tier1 | Out-of-frame | 518 | validated | 0.34772 |
| BRCA | TCGA-A8-A08J-01A | TCGA-A8-A08J | ADNP|MMP24 | ADNP | MMP24 | 20 | 20 | -1 | 1 | 2 | 11 | 11 | 0.28 | 49518554 | 33862075 | tier3 | Out-of-frame | 529 | NA | 0.36095 |
| BRCA | TCGA-AR-A0TS-01A | TCGA-AR-A0TS | ADRBK1|IQGAP1 | ADRBK1 | IQGAP1 | 11 | 15 | 1 | 1 | 27 | 18 | 7 | 0.89 | 67034283 | 90969342 | tier1 | In-frame | 541 | NA | 0.39145 |
| BRCA | TCGA-B6-A0IH-01A | TCGA-B6-A0IH | AFF3|TMEM182 | AFF3 | TMEM182 | 2 | 2 | -1 | 1 | 3 | 1 | 1 | 1 | 100209657 | 103379046 | tier2 | In-frame | 594 | NA | 0.34474 |
| BRCA | TCGA-BH-A0C0-01A | TCGA-BH-A0C0 | AGPAT2|CDC42SE1 | AGPAT2 | CDC42SE1 | 9 | 1 | -1 | -1 | 30 | 47 | 42 | 0.049 | 139571413 | 151027602 | tier1 | In-frame | 652 | NA | 0.35979 |
| BRCA | TCGA-BH-A0DK-01A | TCGA-BH-A0DK | AGRN|NOC4L | AGRN | NOC4L | 1 | 12 | 1 | 1 | 2 | 2 | 2 | 0.12 | 970704 | 132635526 | tier3 | In-frame | 672 | NA | 0.3565 |
| BRCA | TCGA-E2-A1B1-01A | TCGA-E2-A1B1 | AHNAK|EIF2AK2 | AHNAK | EIF2AK2 | 11 | 2 | -1 | -1 | 2 | 19 | 14 | 1.9 | 62283375 | 37342384 | tier3 | NA | 691 | NA | 0.38379 |
| BRCA | TCGA-A8-A09E-01A | TCGA-A8-A09E | AHNAK|RPS6KA4 | AHNAK | RPS6KA4 | 11 | 11 | -1 | 1 | 11 | 8 | 8 | 0.17 | 62259204 | 64132773 | tier1 | Out-of-frame | 693 | NA | 0.38548 |
| BRCA | TCGA-AC-A23H-01A | TCGA-AC-A23H | AHNAK|ZNF827 | AHNAK | ZNF827 | 11 | 4 | -1 | -1 | 2 | 3 | 2 | 5 | 62283375 | 146859787 | tier3 | 3UTR-5UTR | 697 | NA | 0.36967 |
| BRCA | TCGA-GM-A2DK-01A | TCGA-GM-A2DK | AKAP13|IGF1R | AKAP13 | IGF1R | 15 | 15 | 1 | 1 | 3 | 3 | 3 | 0.038 | 85924029 | 99250791 | tier1 | 5UTR-CDS | 729 | NA | 0.39378 |
| BRCA | TCGA-EW-A1P0-01A | TCGA-EW-A1P0 | AKAP13|NRG1 | AKAP13 | NRG1 | 15 | 8 | 1 | 1 | 13 | 8 | 3 | 1.5 | 86087186 | 32453346 | tier1 | Out-of-frame | 732 | NA | 0.38959 |
| BRCA | TCGA-E2-A155-01A | TCGA-E2-A155 | AL137003.1|PTPRK | AL137003.1 | PTPRK | 6 | 6 | -1 | -1 | 56 | 22 | 15 | 2.6 | 16753464 | 128411137 | tier1 | NA | 772 | NA | 0.3691 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | ALCAM|EIF2A | ALCAM | EIF2A | 3 | 3 | 1 | 1 | 88 | 76 | 72 | 0.37 | 105086325 | 150270143 | tier1 | In-frame | 793 | non-validated | 0.35756 |
| BRCA | TCGA-BH-A0BP-01A | TCGA-BH-A0BP | ALCAM|YIF1B | ALCAM | YIF1B | 3 | 19 | 1 | -1 | 22 | 16 | 16 | 1.7 | 105086325 | 38800283 | tier1 | In-frame | 795 | NA | 0.35887 |
| BRCA | TCGA-AC-A4ZE-01A | TCGA-AC-A4ZE | ALDH3B2|ODZ4 | ALDH3B2 | ODZ4 | 11 | 11 | -1 | -1 | 29 | 27 | 1 | 0.031 | 67441908 | 78433962 | tier2 | 5UTR-CDS | 805 | NA | 0.35334 |
| BRCA | TCGA-AC-A6IW-01A | TCGA-AC-A6IW | ALPL|FILIP1L | ALPL | FILIP1L | 1 | 3 | 1 | -1 | 5 | 4 | 2 | 0.11 | 21836010 | 99549449 | tier1 | NA | 850 | NA | 0.34588 |
| BRCA | TCGA-D8-A27W-01A | TCGA-D8-A27W | AMFR|ITGAM | AMFR | ITGAM | 16 | 16 | -1 | 1 | 91 | 115 | 100 | 2.1 | 56419831 | 31332562 | tier1 | In-frame | 873 | NA | 0.37448 |
| BRCA | TCGA-E2-A1IH-01A | TCGA-E2-A1IH | ANK1|ADAM7 | ANK1 | ADAM7 | 8 | 8 | -1 | 1 | 19 | 20 | 20 | 0.024 | 41591489 | 24384268 | tier1 | In-frame | 896 | NA | 0.37551 |
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