TCSA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the GESPs in each cancer type

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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
PRAD	TCGA-J4-A83J-01A	TCGA-J4-A83J	OSBPL8\|TSPAN8	OSBPL8	TSPAN8	12	12	-1	-1	2	1	1	1.4	76844631	71835367	tier2	CDS-5UTR	12094	NA	0.34687
PRAD	TCGA-CH-5771-01A	TCGA-CH-5771	OSBPL9\|SERINC5	OSBPL9	SERINC5	1	5	1	-1	11	11	9	0.92	52082893	79454785	tier1	Out-of-frame	12100	validated	0.35329
PRAD	TCGA-EJ-7125-01A	TCGA-EJ-7125	P4HB\|C7	P4HB	C7	17	5	-1	1	2	62	57	0.003	79801042	40954982	tier4	NA	12137	NA	0.36873
PRAD	TCGA-G9-6366-01A	TCGA-G9-6366	P4HB\|CCT5	P4HB	CCT5	17	5	-1	1	3	4	2	1.2	79801037	10250033	tier1	3UTR-5UTR	12138	NA	0.37233
PRAD	TCGA-KC-A7F5-01A	TCGA-KC-A7F5	P4HB\|CTSF	P4HB	CTSF	17	11	-1	-1	2	3	2	0.053	79801042	66334990	tier4	NA	12141	NA	0.36509
PRAD	TCGA-HC-7210-01A	TCGA-HC-7210	P4HB\|FAR1	P4HB	FAR1	17	11	-1	1	2	8	5	1.9	79801037	13744912	tier3	NA	12143	NA	0.36697
PRAD	TCGA-EJ-7784-01A	TCGA-EJ-7784	P4HB\|MYO6	P4HB	MYO6	17	6	-1	1	2	21	4	0.065	79801037	76595721	tier4	3UTR-CDS	12145	NA	0.37807
PRAD	TCGA-EJ-5525-01A	TCGA-EJ-5525	P4HB\|NDUFV1	P4HB	NDUFV1	17	11	-1	1	2	14	11	0.042	79801037	67375697	tier3	NA	12146	NA	0.3651
PRAD	TCGA-EJ-A46G-01A	TCGA-EJ-A46G	P4HB\|NDUFV1	P4HB	NDUFV1	17	11	-1	1	2	68	56	0.042	79801037	67375697	tier3	NA	12147	NA	0.3651
PRAD	TCGA-EJ-7782-01A	TCGA-EJ-7782	P4HB\|NHP2L1	P4HB	NHP2L1	17	22	-1	-1	2	28	20	0.044	79801042	42071199	tier3	NA	12148	NA	0.367
PRAD	TCGA-EJ-7791-01A	TCGA-EJ-7791	P4HB\|NHP2L1	P4HB	NHP2L1	17	22	-1	-1	2	53	38	0.044	79801042	42071199	tier3	NA	12149	non-validated	0.367
PRAD	TCGA-HC-8256-01A	TCGA-HC-8256	P4HB\|SEC63	P4HB	SEC63	17	6	-1	-1	2	11	7	0.59	79801037	108214782	tier3	NA	12152	NA	0.36642
PRAD	TCGA-KK-A7AP-01A	TCGA-KK-A7AP	P4HB\|ZFP91	P4HB	ZFP91	17	11	-1	1	2	8	7	0.48	79801042	58380235	tier3	NA	12156	NA	0.37159
PRAD	TCGA-EJ-A46G-01A	TCGA-EJ-A46G	PAK1\|NARS2	PAK1	NARS2	11	11	-1	-1	22	22	20	1.2	77184597	78282489	tier1	5UTR-CDS	12206	NA	0.37743
PRAD	TCGA-EJ-7784-01A	TCGA-EJ-7784	PAPOLG\|ABCA12	PAPOLG	ABCA12	2	2	1	-1	2	1	1	0.16	60997646	215821502	tier2	In-frame	12257	NA	0.34719
PRAD	TCGA-J4-A83I-01A	TCGA-J4-A83I	PARD3\|ADAMTS17	PARD3	ADAMTS17	10	15	-1	-1	7	12	11	1.3	34985246	100537794	tier2	Out-of-frame	12265	NA	0.38175
PRAD	TCGA-G9-6364-01A	TCGA-G9-6364	PCNXL2\|CDCA7	PCNXL2	CDCA7	1	2	-1	1	2	2	1	2.4	233372591	174227954	tier2	In-frame	12432	NA	0.33906
PRAD	TCGA-KK-A59X-01A	TCGA-KK-A59X	PCYT1A\|EPHA6	PCYT1A	EPHA6	3	3	-1	1	3	3	1	2.8	196014403	97123994	tier2	NA	12445	NA	0.36738
PRAD	TCGA-HC-7821-01A	TCGA-HC-7821	PDE4D\|PPAP2A	PDE4D	PPAP2A	5	5	-1	-1	17	7	7	1.6	58476421	54737736	tier1	Out-of-frame	12499	NA	0.37079
PRAD	TCGA-ZG-A9L2-01A	TCGA-ZG-A9L2	PDE9A\|TMPRSS2	PDE9A	TMPRSS2	21	21	1	-1	17	24	23	0.83	44153536	42870116	tier1	CDS-5UTR	12522	NA	0.3564

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