Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-7317-01A | TCGA-EJ-7317 | NAA50|CD47 | NAA50 | CD47 | 3 | 3 | -1 | -1 | 4 | 2 | 1 | 0.18 | 113464789 | 107799191 | tier3 | Out-of-frame | 11045 | NA | 0.36301 |
| PRAD | TCGA-YL-A8S8-01A | TCGA-YL-A8S8 | NAALADL2|NLGN1 | NAALADL2 | NLGN1 | 3 | 3 | 1 | 1 | 4 | 7 | 7 | 0.42 | 174577240 | 173993105 | tier1 | In-frame | 11054 | NA | 0.35619 |
| PRAD | TCGA-EJ-7792-01A | TCGA-EJ-7792 | NAALADL2|RSRC1 | NAALADL2 | RSRC1 | 3 | 3 | 1 | 1 | 2 | 2 | 2 | 1.5 | 174577240 | 158015828 | tier3 | Out-of-frame | 11056 | NA | 0.36036 |
| PRAD | TCGA-EJ-5512-01A | TCGA-EJ-5512 | NCAM2|CRYL1 | NCAM2 | CRYL1 | 21 | 13 | 1 | -1 | 20 | 12 | 12 | 1.6 | 22370936 | 20978880 | tier1 | In-frame | 11143 | NA | 0.36232 |
| PRAD | TCGA-J4-A83J-01A | TCGA-J4-A83J | NCKAP1|LYPD6B | NCKAP1 | LYPD6B | 2 | 2 | -1 | 1 | 29 | 48 | 41 | 0.97 | 183888534 | 149987397 | tier1 | CDS-5UTR | 11162 | NA | 0.36071 |
| PRAD | TCGA-HC-7213-01A | TCGA-HC-7213 | NCSTN|SREBF1 | NCSTN | SREBF1 | 1 | 17 | 1 | -1 | 2 | 3 | 3 | 0.46 | 160328736 | 17726944 | tier3 | 3UTR-5UTR | 11268 | NA | 0.3735 |
| PRAD | TCGA-EJ-A8FS-01A | TCGA-EJ-A8FS | NEK7|CD1C | NEK7 | CD1C | 1 | 1 | 1 | 1 | 18 | 12 | 12 | 4.5 | 198126406 | 158260924 | tier1 | 5UTR-CDS | 11360 | NA | 0.36749 |
| PRAD | TCGA-ZG-A9ND-01A | TCGA-ZG-A9ND | NEO1|NR2E3 | NEO1 | NR2E3 | 15 | 15 | 1 | 1 | 6 | 2 | 2 | 1.8 | 73470768 | 72109893 | tier1 | Out-of-frame | 11380 | NA | 0.37842 |
| PRAD | TCGA-KK-A6E2-01A | TCGA-KK-A6E2 | NFIA|CLCA1 | NFIA | CLCA1 | 1 | 1 | 1 | 1 | 3 | 2 | 2 | 0.32 | 61824946 | 86942131 | tier1 | In-frame | 11464 | NA | 0.36361 |
| PRAD | TCGA-EJ-5506-01A | TCGA-EJ-5506 | NFIX|ANXA1 | NFIX | ANXA1 | 19 | 9 | 1 | 1 | 2 | 3 | 3 | 0.45 | 13209610 | 75772570 | tier3 | 3UTR-5UTR | 11489 | NA | 0.38346 |
| PRAD | TCGA-FC-A4JI-01A | TCGA-FC-A4JI | NRG1|STMN2 | NRG1 | STMN2 | 8 | 8 | 1 | 1 | 51 | 36 | 32 | 3 | 32463201 | 80549037 | tier1 | In-frame | 11748 | NA | 0.38026 |
| PRAD | TCGA-HC-A48F-01A | TCGA-HC-A48F | NRP1|PTEN | NRP1 | PTEN | 10 | 10 | -1 | 1 | 10 | 5 | 4 | 0.16 | 33619636 | 89717610 | tier1 | Out-of-frame | 11757 | NA | 0.38903 |
| PRAD | TCGA-EJ-7781-01A | TCGA-EJ-7781 | NTM|CARD18 | NTM | CARD18 | 11 | 11 | 1 | -1 | 4 | 1 | 1 | 0.073 | 131240783 | 105009805 | tier3 | In-frame | 11825 | NA | 0.34465 |
| PRAD | TCGA-HC-7742-01A | TCGA-HC-7742 | NUFIP2|CPD | NUFIP2 | CPD | 17 | 17 | -1 | 1 | 7 | 1 | 1 | 0.29 | 27620801 | 28712007 | tier4 | Out-of-frame | 11875 | NA | 0.34772 |
| PRAD | TCGA-VP-A87D-01A | TCGA-VP-A87D | OCLN|CDK14 | OCLN | CDK14 | 5 | 7 | 1 | 1 | 12 | 17 | 14 | 1.2 | 68809936 | 90836480 | tier1 | CDS-3UTR | 12001 | NA | 0.36608 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | ODZ1|TMEM170A | ODZ1 | TMEM170A | X | 16 | -1 | -1 | 2 | 3 | 3 | 0.66 | 123695521 | 75485737 | tier2 | In-frame | 12005 | NA | 0.35317 |
| PRAD | TCGA-KK-A8IC-01A | TCGA-KK-A8IC | OGT|POLA1 | OGT | POLA1 | X | X | 1 | 1 | 3 | 4 | 2 | 3.7 | 70757922 | 24828015 | tier1 | In-frame | 12015 | NA | 0.37711 |
| PRAD | TCGA-J4-A6G1-01A | TCGA-J4-A6G1 | OLFM4|TOP2B | OLFM4 | TOP2B | 13 | 3 | 1 | -1 | 2 | 5 | 3 | 0.56 | 53626192 | 25674074 | tier3 | 3UTR-CDS | 12032 | NA | 0.37302 |
| PRAD | TCGA-KC-A7F5-01A | TCGA-KC-A7F5 | OPN3|SLC39A11 | OPN3 | SLC39A11 | 1 | 17 | -1 | -1 | 6 | 4 | 2 | 0.9 | 241803184 | 70944014 | tier1 | Out-of-frame | 12040 | NA | 0.34861 |
| PRAD | TCGA-V1-A8MK-01A | TCGA-V1-A8MK | OR51E2|C17orf48 | OR51E2 | C17orf48 | 11 | 17 | -1 | 1 | 2 | 6 | 1 | 1.4 | 4701401 | 10608227 | tier3 | 3UTR-5UTR | 12042 | NA | 0 |
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