Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-HC-8265-01A | TCGA-HC-8265 | MAP4|MON1A | MAP4 | MON1A | 3 | 3 | -1 | -1 | 2 | 2 | 2 | 0.23 | 48130263 | 49950792 | tier2 | 5UTR-CDS | 9888 | NA | 0.36588 |
| PRAD | TCGA-J9-A8CN-01A | TCGA-J9-A8CN | MAPRE1|TM9SF4 | MAPRE1 | TM9SF4 | 20 | 20 | 1 | 1 | 24 | 26 | 24 | 0.003 | 31427662 | 30720816 | tier1 | CDS-5UTR | 9974 | NA | 0.36554 |
| PRAD | TCGA-G9-6338-01A | TCGA-G9-6338 | MB|TRDN | MB | TRDN | 22 | 6 | -1 | -1 | 2 | 67 | 50 | 0.7 | 36002817 | 123758551 | tier4 | NA | 10041 | NA | 0.35031 |
| PRAD | TCGA-EJ-7782-01A | TCGA-EJ-7782 | MCART6|IL1RAPL2 | MCART6 | IL1RAPL2 | X | X | -1 | 1 | 6 | 1 | 1 | 0.19 | 103401559 | 104440157 | tier2 | 5UTR-CDS | 10076 | NA | 0.34247 |
| PRAD | TCGA-EJ-5497-01A | TCGA-EJ-5497 | MIPEP|TNFRSF19 | MIPEP | TNFRSF19 | 13 | 13 | -1 | 1 | 4 | 1 | 1 | 1.2 | 24410379 | 24190006 | tier4 | In-frame | 10380 | NA | 0.35875 |
| PRAD | TCGA-KK-A8I7-01A | TCGA-KK-A8I7 | MKL2|SCNN1B | MKL2 | SCNN1B | 16 | 16 | 1 | 1 | 4 | 2 | 2 | 0.23 | 14312855 | 23364122 | tier1 | Out-of-frame | 10418 | NA | 0.3706 |
| PRAD | TCGA-V1-A9OY-01A | TCGA-V1-A9OY | MLLT4|SYK | MLLT4 | SYK | 6 | 9 | 1 | 1 | 3 | 6 | 6 | 1.4 | 168227917 | 93606140 | tier1 | CDS-5UTR | 10527 | NA | 0.39293 |
| PRAD | TCGA-XJ-A9DX-01A | TCGA-XJ-A9DX | MMP15|CCDC135 | MMP15 | CCDC135 | 16 | 16 | 1 | 1 | 6 | 2 | 2 | 0.011 | 58077531 | 57759980 | tier1 | Out-of-frame | 10547 | NA | 0.35704 |
| PRAD | TCGA-FC-7708-01A | TCGA-FC-7708 | MPDU1|GLP2R | MPDU1 | GLP2R | 17 | 17 | 1 | 1 | 3 | 6 | 5 | 0.021 | 7487283 | 9737124 | tier1 | Out-of-frame | 10588 | NA | 0.36087 |
| PRAD | TCGA-YJ-A8SW-01A | TCGA-YJ-A8SW | MPP5|GPHN | MPP5 | GPHN | 14 | 14 | 1 | 1 | 2 | 1 | 1 | 0.24 | 67736500 | 67147825 | tier3 | 5UTR-CDS | 10619 | NA | 0.36903 |
| PRAD | TCGA-KK-A8IC-01A | TCGA-KK-A8IC | MRC2|PHYHIPL | MRC2 | PHYHIPL | 17 | 10 | 1 | 1 | 9 | 7 | 6 | 0.063 | 60705281 | 61004817 | tier1 | Out-of-frame | 10637 | NA | 0.35281 |
| PRAD | TCGA-WW-A8ZI-01A | TCGA-WW-A8ZI | MRPL44|ABCG1 | MRPL44 | ABCG1 | 2 | 21 | 1 | 1 | 2 | 4 | 4 | 0.22 | 224824719 | 43645781 | tier2 | In-frame | 10663 | NA | 0.36226 |
| PRAD | TCGA-HC-8260-01A | TCGA-HC-8260 | MSMB|ANXA1 | MSMB | ANXA1 | 10 | 9 | 1 | 1 | 2 | 168 | 126 | 100 | 51562511 | 75772570 | tier3 | 3UTR-5UTR | 10741 | NA | 0.3726 |
| PRAD | TCGA-HC-8260-01A | TCGA-HC-8260 | MTRR|SLC30A5 | MTRR | SLC30A5 | 5 | 5 | 1 | 1 | 2 | 2 | 2 | 0.51 | 7878435 | 68413066 | tier4 | In-frame | 10839 | NA | 0.34498 |
| PRAD | TCGA-G9-6371-01A | TCGA-G9-6371 | MYH9|DDX21 | MYH9 | DDX21 | 22 | 10 | -1 | 1 | 2 | 4 | 1 | 0.36 | 36677327 | 70723858 | tier3 | NA | 10902 | NA | 0.38065 |
| PRAD | TCGA-V1-A8WN-01A | TCGA-V1-A8WN | MYH9|KLK3 | MYH9 | KLK3 | 22 | 19 | -1 | 1 | 2 | 1 | 1 | 0.51 | 36685235 | 51358191 | tier4 | NA | 10908 | NA | 0.38132 |
| PRAD | TCGA-EJ-5525-01A | TCGA-EJ-5525 | MYO15B|IGSF5 | MYO15B | IGSF5 | 17 | 21 | 1 | 1 | 5 | 1 | 1 | 2.4 | 73608097 | 41163935 | tier2 | 5UTR-CDS | 10947 | NA | 0.35302 |
| PRAD | TCGA-HC-7211-01A | TCGA-HC-7211 | MYO1B|ABCC4 | MYO1B | ABCC4 | 2 | 13 | 1 | -1 | 2 | 4 | 3 | 0.087 | 192261223 | 95887088 | tier3 | In-frame | 10961 | NA | 0.366 |
| PRAD | TCGA-HC-8262-01A | TCGA-HC-8262 | MYO6|NEGR1 | MYO6 | NEGR1 | 6 | 1 | 1 | -1 | 10 | 5 | 5 | 0.15 | 76558248 | 72163822 | tier4 | In-frame | 10999 | NA | 0.37587 |
| PRAD | TCGA-V1-A9OQ-01A | TCGA-V1-A9OQ | NAA15|HHIP | NAA15 | HHIP | 4 | 4 | 1 | 1 | 4 | 2 | 2 | 2.2 | 140222985 | 145580789 | tier1 | Out-of-frame | 11035 | NA | 0.3483 |
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