Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A7-A0DA-01A | TCGA-A7-A0DA | ADAM10|FIZ1 | ADAM10 | FIZ1 | 15 | 19 | -1 | -1 | 54 | 42 | 35 | 1.7 | 58957296 | 56109267 | tier1 | CDS-5UTR | 404 | NA | 0.37764 |
| BRCA | TCGA-C8-A8HP-01A | TCGA-C8-A8HP | ADAM10|PLAC9 | ADAM10 | PLAC9 | 15 | 10 | -1 | 1 | 83 | 66 | 62 | 0.48 | 59041679 | 81901838 | tier1 | In-frame | 405 | NA | 0.37161 |
| BRCA | TCGA-AN-A0FX-01A | TCGA-AN-A0FX | ADAM32|ZNF251 | ADAM32 | ZNF251 | 8 | 8 | 1 | -1 | 2 | 6 | 6 | 0.9 | 39009067 | 145948767 | tier2 | Out-of-frame | 417 | NA | 0.35399 |
| BRCA | TCGA-D8-A1JK-01A | TCGA-D8-A1JK | ADAM9|CLYBL | ADAM9 | CLYBL | 8 | 13 | 1 | 1 | 15 | 6 | 5 | 0.78 | 38854679 | 100425078 | tier1 | Out-of-frame | 418 | NA | 0.37531 |
| BRCA | TCGA-WT-AB41-01A | TCGA-WT-AB41 | ADAM9|PROSC | ADAM9 | PROSC | 8 | 8 | 1 | 1 | 12 | 13 | 13 | 4.2 | 38865502 | 37623044 | tier1 | In-frame | 421 | NA | 0.37683 |
| BRCA | TCGA-BH-A0BP-01A | TCGA-BH-A0BP | ADAMTS17|PCDHA8 | ADAMTS17 | PCDHA8 | 15 | 5 | -1 | 1 | 3 | 1 | 1 | 0.096 | 100871094 | 140358534 | tier2 | Out-of-frame | 438 | NA | 0.35534 |
| BRCA | TCGA-A1-A0SO-01A | TCGA-A1-A0SO | ADAP1|C8orf38 | ADAP1 | C8orf38 | 7 | 8 | -1 | 1 | 2 | 1 | 1 | 0.061 | 994032 | 96044223 | tier3 | CDS-5UTR | 450 | NA | 0 |
| BRCA | TCGA-A8-A07I-01A | TCGA-A8-A07I | ADCK2|DPP6 | ADCK2 | DPP6 | 7 | 7 | 1 | 1 | 9 | 3 | 2 | 1.4 | 140390613 | 154429531 | tier1 | In-frame | 462 | validated | 0.34766 |
| BRCA | TCGA-AR-A0TW-01A | TCGA-AR-A0TW | ADCY1|EYA4 | ADCY1 | EYA4 | 7 | 6 | 1 | 1 | 18 | 6 | 6 | 0.21 | 45614781 | 133595854 | tier1 | CDS-5UTR | 469 | NA | 0.35549 |
| BRCA | TCGA-A2-A25D-01A | TCGA-A2-A25D | ADCY5|PTPLB | ADCY5 | PTPLB | 3 | 3 | -1 | -1 | 3 | 6 | 6 | 0.091 | 123166259 | 123247321 | tier1 | Out-of-frame | 473 | NA | 0.36756 |
| BRCA | TCGA-E9-A1RH-01A | TCGA-E9-A1RH | ADCY9|GLYR1 | ADCY9 | GLYR1 | 16 | 16 | -1 | -1 | 61 | 46 | 35 | 1 | 4038995 | 4862249 | tier1 | In-frame | 477 | NA | 0.34134 |
| BRCA | TCGA-LL-A5YP-01A | TCGA-LL-A5YP | ADCY9|PRSS27 | ADCY9 | PRSS27 | 16 | 16 | -1 | -1 | 3 | 1 | 1 | 0.16 | 4038995 | 2766527 | tier2 | Out-of-frame | 481 | NA | 0.34897 |
| BRCA | TCGA-S3-AA0Z-01A | TCGA-S3-AA0Z | ADCY9|RMI2 | ADCY9 | RMI2 | 16 | 16 | -1 | 1 | 4 | 2 | 1 | 1.4 | 4163751 | 11444499 | tier2 | In-frame | 483 | NA | 0.34134 |
| BRCA | TCGA-A2-A0T7-01A | TCGA-A2-A0T7 | ADCY9|SRL | ADCY9 | SRL | 16 | 16 | -1 | -1 | 11 | 5 | 5 | 0.44 | 4163751 | 4245787 | tier1 | In-frame | 485 | NA | 0.34372 |
| BRCA | TCGA-AO-A0J2-01A | TCGA-AO-A0J2 | ADD1|SH3BP2 | ADD1 | SH3BP2 | 4 | 4 | 1 | 1 | 2 | 3 | 3 | 0.13 | 2845751 | 2826340 | tier3 | 5UTR-CDS | 498 | validated | 0.38083 |
| BRCA | TCGA-BH-A1EY-01A | TCGA-BH-A1EY | ADD3|XPNPEP1 | ADD3 | XPNPEP1 | 10 | 10 | 1 | -1 | 19 | 19 | 18 | 4.8 | 111768057 | 111652833 | tier1 | 5UTR-CDS | 499 | NA | 0.36206 |
| BRCA | TCGA-E9-A22E-01A | TCGA-E9-A22E | ADIPOR1|CYB5R1 | ADIPOR1 | CYB5R1 | 1 | 1 | -1 | -1 | 8 | 24 | 21 | 0.13 | 202927313 | 202932855 | tier1 | 5UTR-CDS | 505 | NA | 0.35184 |
| BRCA | TCGA-E9-A243-01A | TCGA-E9-A243 | ADIPOR1|RGS8 | ADIPOR1 | RGS8 | 1 | 1 | -1 | -1 | 45 | 47 | 37 | 0.009 | 202912886 | 182617438 | tier1 | In-frame | 506 | NA | 0.34539 |
| BRCA | TCGA-A8-A07R-01A | TCGA-A8-A07R | ADIPOR2|ERC1 | ADIPOR2 | ERC1 | 12 | 12 | 1 | 1 | 9 | 3 | 3 | 0.032 | 1800357 | 1372200 | tier1 | 5UTR-CDS | 508 | NA | 0.35949 |
| BRCA | TCGA-E2-A1LL-01A | TCGA-E2-A1LL | ADIPOR2|FOXJ2 | ADIPOR2 | FOXJ2 | 12 | 12 | 1 | 1 | 52 | 33 | 21 | 0.23 | 1863680 | 8197356 | tier1 | In-frame | 509 | non-validated | 0.34732 |
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