TCSA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the GESPs in each cancer type

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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
PRAD	TCGA-J4-A83I-01A	TCGA-J4-A83I	KCNMB4\|RTKN2	KCNMB4	RTKN2	12	10	1	-1	16	9	9	3.9	70760850	63996022	tier4	Out-of-frame	8593	NA	0.35025
PRAD	TCGA-G9-A9S7-01A	TCGA-G9-A9S7	KDM4B\|ASTN2	KDM4B	ASTN2	19	9	1	-1	2	25	24	0.27	4969241	119382722	tier3	5UTR-CDS	8668	NA	0.33284
PRAD	TCGA-KK-A7AQ-01A	TCGA-KK-A7AQ	KDM4C\|PTPRD	KDM4C	PTPRD	9	9	1	-1	2	3	1	0.48	6990524	10341017	tier2	CDS-5UTR	8686	NA	0.36486
PRAD	TCGA-ZG-A9ND-01A	TCGA-ZG-A9ND	KIAA0825\|GPR98	KIAA0825	GPR98	5	5	-1	1	3	3	3	0.29	93918138	90124761	tier1	5UTR-CDS	8802	NA	0.3512
PRAD	TCGA-EJ-A46G-01A	TCGA-EJ-A46G	KIAA0922\|ARFIP1	KIAA0922	ARFIP1	4	4	1	1	2	2	2	0.61	154471293	153791905	tier3	Out-of-frame	8810	NA	0.35696
PRAD	TCGA-V1-A9O5-01A	TCGA-V1-A9O5	KLK2\|FGFR2	KLK2	FGFR2	19	10	1	-1	543	425	408	1.7	51376775	123310973	tier1	In-frame	9079	NA	0.3851
PRAD	TCGA-EJ-A8FU-01A	TCGA-EJ-A8FU	LMBR1\|PTPRN2	LMBR1	PTPRN2	7	7	-1	-1	29	18	16	0.83	156549087	157396767	tier1	In-frame	9387	NA	0.35877
PRAD	TCGA-XK-AAJ3-01A	TCGA-XK-AAJ3	LNPEP\|PPIP5K2	LNPEP	PPIP5K2	5	5	1	1	25	35	31	0.77	96322374	102537223	tier1	Out-of-frame	9416	NA	0.36651
PRAD	TCGA-EJ-A46G-01A	TCGA-EJ-A46G	LPHN2\|AK5	LPHN2	AK5	1	1	1	1	140	81	78	0.072	82302742	77759478	tier1	In-frame	9445	NA	0.36484
PRAD	TCGA-J4-AATZ-01A	TCGA-J4-AATZ	LPP\|LIPJ	LPP	LIPJ	3	10	1	1	5	1	1	0.96	188426181	90347023	tier2	CDS-5UTR	9465	NA	0.36737
PRAD	TCGA-VN-A88N-01A	TCGA-VN-A88N	LRBA\|HFE2	LRBA	HFE2	4	1	-1	1	6	11	11	0.22	151656410	145415279	tier1	Out-of-frame	9478	NA	0.35623
PRAD	TCGA-KK-A8ID-01A	TCGA-KK-A8ID	LRIG1\|SUCLG2	LRIG1	SUCLG2	3	3	-1	-1	3	4	4	1.5	66501983	67451275	tier1	Out-of-frame	9498	NA	0.35205
PRAD	TCGA-SU-A7E7-01A	TCGA-SU-A7E7	LRP1\|KLK3	LRP1	KLK3	12	19	1	1	2	2	1	1	57548153	51358191	tier4	CDS-5UTR	9507	NA	0.3794
PRAD	TCGA-EJ-A65D-01A	TCGA-EJ-A65D	LRRC58\|LSAMP	LRRC58	LSAMP	3	3	-1	-1	2	2	2	0.14	120067591	115805403	tier4	In-frame	9576	NA	0.35269
PRAD	TCGA-EJ-7782-01A	TCGA-EJ-7782	LYPD6B\|LRBA	LYPD6B	LRBA	2	4	1	-1	13	19	11	2	149975677	151719294	tier1	5UTR-CDS	9700	NA	0.35319
PRAD	TCGA-J9-A52C-01A	TCGA-J9-A52C	LYSMD1\|MFSD4	LYSMD1	MFSD4	1	1	-1	1	2	2	2	0.36	151138223	205566908	tier4	Out-of-frame	9705	NA	0.34044
PRAD	TCGA-HC-7745-01A	TCGA-HC-7745	MAGED2\|SCAMP4	MAGED2	SCAMP4	X	19	1	1	2	10	7	2.4	54842445	1917693	tier3	3UTR-CDS	9765	NA	0.35182
PRAD	TCGA-ZG-A9KY-01A	TCGA-ZG-A9KY	MAGI1\|SUCLG2	MAGI1	SUCLG2	3	3	-1	-1	6	8	6	1.4	66023671	67451275	tier1	Out-of-frame	9769	NA	0.37388
PRAD	TCGA-KK-A8II-01A	TCGA-KK-A8II	MAGI1\|TBC1D30	MAGI1	TBC1D30	3	12	-1	1	16	4	4	0.1	66023671	65221615	tier1	CDS-5UTR	9770	NA	0.3735
PRAD	TCGA-HC-8264-01B	TCGA-HC-8264	MAP3K12\|GDF11	MAP3K12	GDF11	12	12	-1	1	5	8	7	0.038	53893211	56142370	tier1	5UTR-CDS	9854	NA	0.37626

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