Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-5516-01A | TCGA-EJ-5516 | HGD|CACNA1D | HGD | CACNA1D | 3 | 3 | -1 | 1 | 10 | 12 | 11 | 0.045 | 120389274 | 53777038 | tier1 | In-frame | 7731 | NA | 0.36471 |
| PRAD | TCGA-G9-6371-01A | TCGA-G9-6371 | HLA-C|DDX21 | HLA-C | DDX21 | 6 | 10 | -1 | 1 | 2 | 1 | 1 | 0.95 | 31236526 | 70723858 | tier3 | NA | 7828 | NA | 0.37382 |
| PRAD | TCGA-CH-5761-01A | TCGA-CH-5761 | HLA-C|FADS2 | HLA-C | FADS2 | 6 | 11 | -1 | 1 | 2 | 2 | 1 | 0.73 | 31236526 | 61588853 | tier4 | 3UTR-CDS | 7830 | NA | 0.3639 |
| PRAD | TCGA-HC-7748-01A | TCGA-HC-7748 | HNRNPA2B1|CANT1 | HNRNPA2B1 | CANT1 | 7 | 17 | -1 | -1 | 2 | 19 | 4 | 0.46 | 26236208 | 76994045 | tier4 | CDS-5UTR | 7881 | NA | 0.36772 |
| PRAD | TCGA-EJ-5518-01A | TCGA-EJ-5518 | HNRNPUL1|SLC8A2 | HNRNPUL1 | SLC8A2 | 19 | 19 | 1 | -1 | 65 | 76 | 63 | 2.7 | 41787180 | 47960851 | tier1 | In-frame | 7913 | NA | 0.37059 |
| PRAD | TCGA-G9-6371-01A | TCGA-G9-6371 | HSPA1B|MYLK | HSPA1B | MYLK | 6 | 3 | 1 | -1 | 2 | 1 | 1 | 0.021 | 31798031 | 123519035 | tier4 | NA | 7994 | NA | 0.38961 |
| PRAD | TCGA-VP-A875-01A | TCGA-VP-A875 | IFNGR1|SMCHD1 | IFNGR1 | SMCHD1 | 6 | 18 | -1 | 1 | 7 | 4 | 3 | 0.66 | 137540380 | 2760650 | tier1 | Out-of-frame | 8063 | NA | 0.36563 |
| PRAD | TCGA-J9-A8CL-01A | TCGA-J9-A8CL | IL13RA1|DOCK11 | IL13RA1 | DOCK11 | X | X | 1 | 1 | 3 | 2 | 2 | 0.96 | 117875119 | 117727177 | tier1 | In-frame | 8159 | NA | 0.36927 |
| PRAD | TCGA-EJ-7782-01A | TCGA-EJ-7782 | IL1RAPL2|STK39 | IL1RAPL2 | STK39 | X | 2 | 1 | -1 | 8 | 7 | 7 | 0.12 | 104478688 | 168821236 | tier1 | Out-of-frame | 8177 | NA | 0.37242 |
| PRAD | TCGA-ZG-A9L2-01A | TCGA-ZG-A9L2 | IL6ST|DDX4 | IL6ST | DDX4 | 5 | 5 | -1 | 1 | 16 | 17 | 15 | 0.27 | 55272043 | 55034778 | tier1 | CDS-5UTR | 8203 | NA | 0.3813 |
| PRAD | TCGA-YL-A9WL-01A | TCGA-YL-A9WL | IL6ST|LAMC2 | IL6ST | LAMC2 | 5 | 1 | -1 | 1 | 2 | 7 | 7 | 0.47 | 55247292 | 183177016 | tier3 | In-frame | 8204 | NA | 0.38161 |
| PRAD | TCGA-HC-7077-01A | TCGA-HC-7077 | INADL|PDE4B | INADL | PDE4B | 1 | 1 | 1 | 1 | 5 | 2 | 2 | 1.4 | 62393501 | 66713143 | tier1 | Out-of-frame | 8227 | NA | 0.37202 |
| PRAD | TCGA-ZG-A9L4-01A | TCGA-ZG-A9L4 | ITFG1|SLC45A2 | ITFG1 | SLC45A2 | 16 | 5 | -1 | -1 | 7 | 8 | 8 | 1.1 | 47345151 | 33964121 | tier1 | Out-of-frame | 8368 | NA | 0.3407 |
| PRAD | TCGA-KK-A6E5-01A | TCGA-KK-A6E5 | ITGA6|MYO3B | ITGA6 | MYO3B | 2 | 2 | 1 | 1 | 3 | 1 | 1 | 0.11 | 173292698 | 171191895 | tier2 | Out-of-frame | 8384 | NA | 0.37577 |
| PRAD | TCGA-VN-A88P-01A | TCGA-VN-A88P | ITGA9|HMOX2 | ITGA9 | HMOX2 | 3 | 16 | 1 | 1 | 3 | 4 | 4 | 0.15 | 37584076 | 4533638 | tier1 | CDS-5UTR | 8387 | NA | 0.37021 |
| PRAD | TCGA-G9-6371-01A | TCGA-G9-6371 | ITM2B|CBS | ITM2B | CBS | 13 | 21 | 1 | -1 | 2 | 11 | 4 | 0.6 | 48835524 | 44476011 | tier4 | NA | 8420 | NA | 0.35659 |
| PRAD | TCGA-EJ-7788-01A | TCGA-EJ-7788 | ITPR2|CLEC2A | ITPR2 | CLEC2A | 12 | 12 | -1 | -1 | 40 | 34 | 30 | 1.2 | 26703180 | 10074831 | tier1 | Out-of-frame | 8452 | NA | 0.36454 |
| PRAD | TCGA-J4-A83I-01A | TCGA-J4-A83I | JMJD1C|ANK3 | JMJD1C | ANK3 | 10 | 10 | -1 | -1 | 14 | 4 | 4 | 1.3 | 65024411 | 62374982 | tier2 | In-frame | 8500 | NA | 0.37986 |
| PRAD | TCGA-HC-A76X-01A | TCGA-HC-A76X | KCMF1|GGCX | KCMF1 | GGCX | 2 | 2 | 1 | -1 | 4 | 4 | 4 | 1.4 | 85198590 | 85783383 | tier1 | Out-of-frame | 8562 | NA | 0.35268 |
| PRAD | TCGA-HC-7209-01A | TCGA-HC-7209 | KCNMA1|FARP1 | KCNMA1 | FARP1 | 10 | 13 | -1 | 1 | 34 | 31 | 29 | 0.008 | 79397023 | 98865474 | tier1 | CDS-5UTR | 8586 | NA | 0.36875 |
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