Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-CH-5794-01A | TCGA-CH-5794 | FRAS1|MRPL1 | FRAS1 | MRPL1 | 4 | 4 | 1 | 1 | 14 | 7 | 6 | 0.19 | 78979239 | 78792898 | tier1 | In-frame | 6710 | NA | 0.34948 |
| PRAD | TCGA-HC-8265-01A | TCGA-HC-8265 | FRS2|RASSF3 | FRS2 | RASSF3 | 12 | 12 | 1 | 1 | 11 | 7 | 6 | 0.07 | 69864310 | 65078567 | tier2 | 5UTR-CDS | 6780 | NA | 0.37598 |
| PRAD | TCGA-YL-A8SF-01A | TCGA-YL-A8SF | FUBP1|DNAJB4 | FUBP1 | DNAJB4 | 1 | 1 | -1 | 1 | 5 | 28 | 24 | 0.27 | 78444569 | 78478735 | tier1 | Out-of-frame | 6821 | NA | 0.37228 |
| PRAD | TCGA-KK-A7AY-01A | TCGA-KK-A7AY | FUK|ABCB5 | FUK | ABCB5 | 16 | 7 | 1 | 1 | 2 | 1 | 1 | 0.067 | 70512553 | 20778606 | tier2 | Out-of-frame | 6824 | NA | 0.34425 |
| PRAD | TCGA-CH-5766-01A | TCGA-CH-5766 | FZD4|RP11-115C10.1 | FZD4 | RP11-115C10.1 | 11 | 11 | -1 | 1 | 20 | 8 | 6 | 0.36 | 86665843 | 126551678 | tier1 | Out-of-frame | 6859 | NA | 0.35606 |
| PRAD | TCGA-ZG-A9KY-01A | TCGA-ZG-A9KY | GABRB3|TJP1 | GABRB3 | TJP1 | 15 | 15 | -1 | -1 | 4 | 4 | 4 | 0.48 | 27017549 | 30092905 | tier1 | In-frame | 6902 | NA | 0.37602 |
| PRAD | TCGA-XK-AAJA-01A | TCGA-XK-AAJA | GALNT14|NRXN1 | GALNT14 | NRXN1 | 2 | 2 | -1 | -1 | 7 | 6 | 6 | 0.21 | 31360824 | 50170929 | tier1 | In-frame | 6925 | NA | 0.3655 |
| PRAD | TCGA-J4-AATZ-01A | TCGA-J4-AATZ | GGT1|PRODH | GGT1 | PRODH | 22 | 22 | 1 | -1 | 11 | 7 | 7 | 0.28 | 24990853 | 18918711 | tier1 | NA | 7053 | NA | 0.34272 |
| PRAD | TCGA-G9-6496-01A | TCGA-G9-6496 | GNAS|FN1 | GNAS | FN1 | 20 | 2 | 1 | -1 | 2 | 7 | 5 | 1.2 | 57486247 | 216274837 | tier3 | 3UTR-CDS | 7190 | NA | 0.38119 |
| PRAD | TCGA-EJ-5499-01A | TCGA-EJ-5499 | GNPAT|PCNXL2 | GNPAT | PCNXL2 | 1 | 1 | 1 | -1 | 3 | 3 | 3 | 0.64 | 231403649 | 233353930 | tier1 | Out-of-frame | 7247 | NA | 0.34882 |
| PRAD | TCGA-EJ-5496-01A | TCGA-EJ-5496 | GOLPH3|SLC6A19 | GOLPH3 | SLC6A19 | 5 | 5 | -1 | 1 | 9 | 7 | 6 | 1.7 | 32173916 | 1219018 | tier1 | In-frame | 7282 | NA | 0.34 |
| PRAD | TCGA-HC-A76W-01A | TCGA-HC-A76W | GPC6|GPC5 | GPC6 | GPC5 | 13 | 13 | 1 | 1 | 4 | 2 | 1 | 3.3 | 93879869 | 93518535 | tier3 | In-frame | 7331 | NA | 0.34681 |
| PRAD | TCGA-HC-7232-01A | TCGA-HC-7232 | GPHN|SLC8A3 | GPHN | SLC8A3 | 14 | 14 | 1 | -1 | 13 | 13 | 11 | 0.066 | 67589094 | 70527656 | tier1 | In-frame | 7340 | NA | 0.36202 |
| PRAD | TCGA-J9-A8CL-01A | TCGA-J9-A8CL | GPR107|GARNL3 | GPR107 | GARNL3 | 9 | 9 | 1 | 1 | 32 | 31 | 29 | 1 | 132861811 | 130155362 | tier1 | Out-of-frame | 7349 | NA | 0.34274 |
| PRAD | TCGA-VP-A876-01A | TCGA-VP-A876 | GPR160|PDCD10 | GPR160 | PDCD10 | 3 | 3 | 1 | -1 | 9 | 7 | 5 | 0.52 | 169756831 | 167405104 | tier1 | 5UTR-CDS | 7369 | NA | 0.35865 |
| PRAD | TCGA-CH-5766-01A | TCGA-CH-5766 | GPRC5C|CLDN4 | GPRC5C | CLDN4 | 17 | 7 | 1 | 1 | 2 | 4 | 3 | 0.44 | 72443568 | 73245193 | tier3 | 3UTR-5UTR | 7384 | NA | 0.36005 |
| PRAD | TCGA-HC-A4ZV-01A | TCGA-HC-A4ZV | GSK3B|LSAMP | GSK3B | LSAMP | 3 | 3 | -1 | -1 | 4 | 4 | 3 | 0.14 | 119666115 | 115738487 | tier1 | Out-of-frame | 7488 | NA | 0.3817 |
| PRAD | TCGA-ZG-A9KY-01A | TCGA-ZG-A9KY | GSK3B|SEMA5B | GSK3B | SEMA5B | 3 | 3 | -1 | -1 | 25 | 21 | 19 | 0.38 | 119582266 | 122680148 | tier1 | CDS-5UTR | 7491 | NA | 0.38151 |
| PRAD | TCGA-J4-A83J-01A | TCGA-J4-A83J | GULP1|NCKAP1 | GULP1 | NCKAP1 | 2 | 2 | 1 | -1 | 14 | 16 | 14 | 0.38 | 189248616 | 183853914 | tier1 | 5UTR-CDS | 7564 | NA | 0.36325 |
| PRAD | TCGA-EJ-7218-01B | TCGA-EJ-7218 | HDLBP|DSP | HDLBP | DSP | 2 | 6 | -1 | 1 | 2 | 26 | 1 | 0.64 | 242168639 | 7575528 | tier3 | NA | 7649 | NA | 0.36329 |
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