Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-KK-A5A1-01A | TCGA-KK-A5A1 | EPN2|SLC5A10 | EPN2 | SLC5A10 | 17 | 17 | 1 | 1 | 2 | 8 | 7 | 1.3 | 19140844 | 18916723 | tier3 | 5UTR-CDS | 5691 | NA | 0.35839 |
| PRAD | TCGA-J4-AATZ-01A | TCGA-J4-AATZ | EPN3|SEMA4G | EPN3 | SEMA4G | 17 | 10 | 1 | 1 | 6 | 3 | 1 | 0.17 | 48610346 | 102733304 | tier2 | 5UTR-CDS | 5693 | NA | 0.36256 |
| PRAD | TCGA-YJ-A8SW-01A | TCGA-YJ-A8SW | EPS15L1|CPAMD8 | EPS15L1 | CPAMD8 | 19 | 19 | -1 | -1 | 16 | 31 | 29 | 0.65 | 16582724 | 17049256 | tier1 | In-frame | 5706 | NA | 0.36506 |
| PRAD | TCGA-KK-A6E4-01A | TCGA-KK-A6E4 | ERBB3|FOXA1 | ERBB3 | FOXA1 | 12 | 14 | 1 | -1 | 2 | 8 | 1 | 0.6 | 56497283 | 38069245 | tier3 | 3UTR-5UTR | 5741 | NA | 0.3874 |
| PRAD | TCGA-XQ-A8TB-01A | TCGA-XQ-A8TB | ERG|ABCC4 | ERG | ABCC4 | 21 | 13 | -1 | -1 | 10 | 5 | 5 | 1 | 39947586 | 95900007 | tier1 | Out-of-frame | 5765 | NA | 0.37562 |
| PRAD | TCGA-KK-A6E1-01A | TCGA-KK-A6E1 | ERG|KCNJ6 | ERG | KCNJ6 | 21 | 21 | -1 | -1 | 2 | 29 | 26 | 0.13 | 39947586 | 38997786 | tier3 | Out-of-frame | 5766 | NA | 0.37364 |
| PRAD | TCGA-J4-A67S-01A | TCGA-J4-A67S | ERG|TMPRSS2 | ERG | TMPRSS2 | 21 | 21 | -1 | -1 | 2 | 5 | 5 | 2 | 39947586 | 42870116 | tier2 | CDS-5UTR | 5770 | NA | 0.3753 |
| PRAD | TCGA-V1-A8WS-01A | TCGA-V1-A8WS | ERG|TMPRSS2 | ERG | TMPRSS2 | 21 | 21 | -1 | -1 | 4 | 7 | 7 | 2 | 39947586 | 42852529 | tier1 | Out-of-frame | 5771 | NA | 0.3753 |
| PRAD | TCGA-J4-A83I-01A | TCGA-J4-A83I | ERG|ZNRF3 | ERG | ZNRF3 | 21 | 22 | -1 | 1 | 2 | 1 | 1 | 0.1 | 39947586 | 29383064 | tier3 | In-frame | 5772 | NA | 0.37209 |
| PRAD | TCGA-YL-A8SR-01B | TCGA-YL-A8SR | EYS|BAI3 | EYS | BAI3 | 6 | 6 | -1 | 1 | 6 | 2 | 2 | 0.054 | 66005756 | 70034764 | tier1 | Out-of-frame | 5953 | NA | 0.35751 |
| PRAD | TCGA-HC-8265-01A | TCGA-HC-8265 | FAM129B|CLDN4 | FAM129B | CLDN4 | 9 | 7 | -1 | 1 | 2 | 6 | 2 | 0.17 | 130267622 | 73245193 | tier2 | 3UTR-5UTR | 6036 | NA | 0.35843 |
| PRAD | TCGA-YL-A8S8-01A | TCGA-YL-A8S8 | FAM171B|KYNU | FAM171B | KYNU | 2 | 2 | 1 | 1 | 22 | 13 | 12 | 0.11 | 187559138 | 143642918 | tier1 | CDS-5UTR | 6098 | NA | 0.33982 |
| PRAD | TCGA-V1-A8WL-01A | TCGA-V1-A8WL | FAM38A|MNS1 | FAM38A | MNS1 | 16 | 15 | -1 | -1 | 19 | 22 | 21 | 2 | 88851309 | 56756445 | tier1 | Out-of-frame | 6171 | NA | 0.33909 |
| PRAD | TCGA-G9-6377-01A | TCGA-G9-6377 | FAM38A|TMEM219 | FAM38A | TMEM219 | 16 | 16 | -1 | 1 | 4 | 3 | 3 | 0.023 | 88785982 | 29974431 | tier1 | CDS-5UTR | 6173 | NA | 0.33107 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | FANCC|ROR2 | FANCC | ROR2 | 9 | 9 | -1 | -1 | 10 | 4 | 2 | 0.67 | 98002931 | 94538100 | tier1 | Out-of-frame | 6231 | NA | 0.3704 |
| PRAD | TCGA-YJ-A8SW-01A | TCGA-YJ-A8SW | FARS2|RIPK1 | FARS2 | RIPK1 | 6 | 6 | 1 | 1 | 8 | 6 | 5 | 0.27 | 5545573 | 3076998 | tier1 | CDS-5UTR | 6256 | NA | 0.38693 |
| PRAD | TCGA-YJ-A8SW-01A | TCGA-YJ-A8SW | FCHSD2|C2CD3 | FCHSD2 | C2CD3 | 11 | 11 | -1 | -1 | 4 | 2 | 2 | 0.096 | 72851076 | 73850873 | tier1 | Out-of-frame | 6390 | NA | 0.36475 |
| PRAD | TCGA-EJ-A7NM-01A | TCGA-EJ-A7NM | FGFR3|AES | FGFR3 | AES | 4 | 19 | 1 | -1 | 353 | 328 | 292 | 0.076 | 1808661 | 3061255 | tier1 | In-frame | 6473 | NA | 0.3845 |
| PRAD | TCGA-V1-A8MG-01A | TCGA-V1-A8MG | FOXN3|KCNQ1 | FOXN3 | KCNQ1 | 14 | 11 | -1 | 1 | 7 | 3 | 3 | 0.87 | 89747294 | 2790074 | tier1 | Out-of-frame | 6673 | NA | 0.36453 |
| PRAD | TCGA-YL-A8SA-01A | TCGA-YL-A8SA | FOXP1|HRH1 | FOXP1 | HRH1 | 3 | 3 | -1 | 1 | 3 | 2 | 2 | 1.2 | 71247353 | 11300689 | tier1 | CDS-5UTR | 6692 | NA | 0.36726 |
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